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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.735235 (10 seq.)
>W1711626888
MPKY01000003
Gammaproteobacteria
Marinobacter nauticus hydrocarbonoclasticus [MPKY]
198998
198924
-
Gly
TCC
[ENA]
¡û
>WENV170193793
CEPI01031290
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
97
171
+
Gly
TCC
[ENA]
¡û
>W1810385161
PXNO01000015
Gammaproteobacteria
Marinobacter shengliensis SL013A34A2 [PXNO]
1411
1337
-
Gly
TCC
[ENA]
¡û
>W2011706496
SWKL01000055
Gammaproteobacteria
Marinobacter sp. LZ-6 [SWKL]
197823
197749
-
Gly
TCC
[ENA]
¡û
>C231569368
CP115811
Gammaproteobacteria
Marinobacter alkaliphilus JY28 [CP115811]
676576
676650
+
Gly
TCC
-
¡û
>C241013060
AP028062
Gammaproteobacteria
Marinobacter shengliensis D49 [AP028062]
761055
761129
+
Gly
TCC
-
¡û
>C241094772
CP045324
Gammaproteobacteria
Marinobacter sp. THAF197a [CP045324]
577887
577961
+
Gly
TCC
-
¡û
>C241095537
CP045367
Gammaproteobacteria
Marinobacter sp. THAF39 [CP045367]
577854
577928
+
Gly
TCC
-
¡û
>C161076718
CP014754
Gammaproteobacteria
Marinobacter sp. LQ44 [CP014754]
3179224
3179298
+
Gly
TCC
[Ensembl]
¡û
>W1610781621
LOCO01000043
Gammaproteobacteria
Marinobacter excellens LAMA 842 [LOCO]
8198
8272
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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