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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.735260 (60 seq.)
>W1710786978
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2279081
2279007
-
Val
TAC
[ENA]
¡û
>W1711183445
LWLA01000045
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
115899
115825
-
Val
TAC
[ENA]
¡û
>W1711627047
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
5054009
5054083
+
Val
TAC
[ENA]
¡û
>C171109506
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
4083049
4083123
+
Val
TAC
-
¡û
>WENV180018621
FTAE01000014
[FTAE] metagenome; soil
1947
2019
+
Val
TAC
[ENA]
¡û
>WENV180023379
FTHV01003379
[FTHV] metagenome; soil
276
204
-
Val
TAC
[ENA]
¡û
>WENV180023506
FTHY01002478
[FTHY] metagenome; soil
276
204
-
Val
TAC
[ENA]
¡û
>WENV180024803
FTIJ01034713
[FTIJ] metagenome; soil
314
242
-
Val
TAC
[ENA]
¡û
>WENV180033137
FTKF01000001
[FTKF] metagenome; soil
72
144
+
Val
TAC
[ENA]
¡û
>WENV180033183
FTKF01017959
[FTKF] metagenome; soil
302
374
+
Val
TAC
[ENA]
¡û
>WENV180033878
FTKL01582697
[FTKL] metagenome; soil
1382
1310
-
Val
TAC
[ENA]
¡û
>WENV180035397
FTKT01457726
[FTKT] metagenome; soil
86306
86234
-
Val
TAC
[ENA]
¡û
>W141282714
JAIY01000007
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
314149
314221
+
Val
TAC
[ENA]
¡û
>WENV170565631
FJVZ01001483
[FJVZ] metagenome; soil
323
395
+
Val
TAC
[ENA]
¡û
>W141755624
JNWR01000012
Actinomycetota
Kitasatospora aureofaciens [JNWR]
15199
15125
-
Val
TAC
[ENA]
¡û
>W141757020
JNXO01003106
Actinomycetota
Kitasatospora misakiensis [JNXO]
243
317
+
Val
TAC
[ENA]
¡û
>W141764995
JODB01002503
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
5392
5320
-
Val
TAC
[ENA]
¡û
>W141766024
JODS01000019
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
127387
127459
+
Val
TAC
[ENA]
¡û
>W141767546
JOER01000043
Actinomycetota
Kitasatospora aureofaciens [JOER]
7654
7728
+
Val
TAC
[ENA]
¡û
>W141768719
JOFK01000002
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
371008
370934
-
Val
TAC
[ENA]
¡û
>W141770112
JOGG01000041
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
56160
56086
-
Val
TAC
[ENA]
¡û
>W141771988
JOHN01000076
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
33564
33490
-
Val
TAC
[ENA]
¡û
>W141772069
JOHO01000120
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
11
83
+
Val
TAC
[ENA]
¡û
>W141772070
JOHO01000120
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
275
347
+
Val
TAC
[ENA]
¡û
>W141819984
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
4276519
4276591
+
Val
TAC
[ENA]
¡û
>W1810394731
PYBW01000140
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
400
474
+
Val
TAC
[ENA]
¡û
>W1810907995
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
4015896
4015823
-
Val
TAC
[ENA]
¡û
>W2011491092
RSFG01000003
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
457278
457352
+
Val
TAC
[ENA]
¡û
>W2012230680
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
1540959
1540885
-
Val
TAC
[ENA]
¡û
>W2110039420
BMSD01000004
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
121834
121762
-
Val
TAC
[ENA]
¡û
>W2110042496
BMUB01000002
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
105682
105756
+
Val
TAC
[ENA]
¡û
>W2110053238
BNBO01000005
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
1954
1880
-
Val
TAC
[ENA]
¡û
>W2110053824
BNBY01000010
Actinomycetota
Kitasatospora xanthocidica JCM 4862 [BNBY]
142276
142350
+
Val
TAC
[ENA]
¡û
>W2110556229
JAGIYX010000012
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
151885
151959
+
Val
TAC
[ENA]
¡û
>W2110641923
JAHSQD010000051
Actinomycetota
Streptomyces sp. LS1784 [JAHSQD]
1996
2069
+
Val
TAC
[ENA]
¡û
>W2110645356
JAHTKP010000002
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
99174
99247
+
Val
TAC
[ENA]
¡û
>C201037020
CP023698
Actinomycetota
Streptomyces viridifaciens ATCC 11989 [CP023698]
5288016
5288090
+
Val
TAC
-
¡û
>W2110746828
LFMD02000003
Actinomycetota
Kitasatospora sp. SUK 42 [LFMD]
813755
813682
-
Val
TAC
[ENA]
¡û
>W2110748576
MECK01000057
Actinomycetota
Streptomyces sp. CBMA123 [MECK]
61082
61009
-
Val
TAC
[ENA]
¡û
>C231284942
CP090841
Actinomycetota
Streptomyces viridifaciens DSM 40239 [CP090841]
5174273
5174347
+
Val
TAC
-
¡û
>W2110751215
MSJQ01000031
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
9082
9009
-
Val
TAC
[ENA]
¡û
>C231566214
CP115450
Actinomycetota
Kitasatospora sp. HUAS 3-15 [CP115450]
5913385
5913458
+
Val
TAC
-
¡û
>W2130030997
JAFLNG010000807
Actinomycetota
Streptomyces sp. FH025 [JAFLNG]
3090
3017
-
Val
TAC
[ENA]
¡û
>C241202578
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
2923043
2922971
-
Val
TAC
-
¡û
>C241209699
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
2845123
2845049
-
Val
TAC
-
¡û
>C241209770
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
2984303
2984231
-
Val
TAC
-
¡û
>C241210201
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
6687973
6688045
+
Val
TAC
-
¡û
>C241210303
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
2885916
2885842
-
Val
TAC
-
¡û
>C241211722
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
3446025
3445953
-
Val
TAC
-
¡û
>C241211792
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
3194335
3194263
-
Val
TAC
-
¡û
>C241321870
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
3214297
3214224
-
Val
TAC
-
¡û
>W1511311693
JPRF01000493
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
7351
7425
+
Val
TAC
[ENA]
¡û
>W1511545152
JZKG01000005
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
12688
12762
+
Val
TAC
[ENA]
¡û
>W1511545276
JZKH01000107
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
7531
7603
+
Val
TAC
[ENA]
¡û
>W1511555620
JZWY01000077
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
11949
12021
+
Val
TAC
[ENA]
¡û
>W1511590504
LBHA01000960
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
1145
1071
-
Val
TAC
[ENA]
¡û
>W1511687911
LFVW01000397
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
10654
10582
-
Val
TAC
[ENA]
¡û
>W1511696825
LGDO01000516
Actinomycetota
Streptomyces sp. XY431 [LGDO]
35394
35322
-
Val
TAC
[ENA]
¡û
>W1610650833
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2279081
2279007
-
Val
TAC
[ENA]
¡û
>W1710765799
LIPD01000001
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
293603
293677
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK