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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.735264 (53 seq.)
>W1711129975
LUUM01000301
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
756
682
-
Gln
TTG
[ENA]
¡û
>W1711228854
LXWX01000081
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
23613
23687
+
Gln
TTG
[ENA]
¡û
>W1711694764
MSIG01000017
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
72920
72994
+
Gln
TTG
[ENA]
¡û
>C171101469
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
1893711
1893785
+
Gln
TTG
-
¡û
>W131163816
ARAB01000006
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
114812
114738
-
Gln
TTG
[ENA]
¡û
>W131166801
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1096514
1096588
+
Gln
TTG
[ENA]
¡û
>WENV180032042
FTJU01019587
[FTJU] metagenome; soil
828
754
-
Gln
TTG
[ENA]
¡û
>WENV180255822
OBEQ010760088
[OBEQ] groundwater metagenome; groundwater
534
460
-
Gln
TTG
[ENA]
¡û
>WENV181192155
OEPS010437889
[OEPS] soil metagenome; soil
35
109
+
Gln
TTG
[ENA]
¡û
>W141216052
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1466804
1466730
-
Gln
TTG
[ENA]
¡û
>WENV183693757
ORMF012132620
[ORMF] groundwater metagenome; groundwater
339
265
-
Gln
TTG
[ENA]
¡û
>WENV170004405
AGTN01669891
[AGTN] bioreactor metagenome; poplar biomass
362
288
-
Gln
TTG
[ENA]
¡û
>C181089635
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
3899693
3899619
-
Gln
TTG
-
¡û
>C191118877
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
15839
15913
+
Gln
TTG
-
¡û
>W141701375
JMKQ01000004
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
491252
491178
-
Gln
TTG
[ENA]
¡û
>W141821208
JQNK01000008
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
743709
743635
-
Gln
TTG
[ENA]
¡û
>W1810330552
PUIV01000003
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
196409
196483
+
Gln
TTG
[ENA]
¡û
>W1810397180
PYDU01000001
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
6381
6307
-
Gln
TTG
[ENA]
¡û
>W2010080243
BGJX01000031
Alphaproteobacteria
Methylosinus sp. Ce-a6 [BGJX]
36770
36844
+
Gln
TTG
[ENA]
¡û
>W2010080282
BGJY01000012
Alphaproteobacteria
Methylosinus sporium DSM 17706 [BGJY]
24334
24408
+
Gln
TTG
[ENA]
¡û
>W2010459188
JAAFZE010000012
Alphaproteobacteria
Methylocystis sp. MJC1 [JAAFZE]
5127
5053
-
Gln
TTG
[ENA]
¡û
>W2010639484
JABVWW010000006
Alphaproteobacteria
Methylocystis sp. FS [JABVWW]
86850
86776
-
Gln
TTG
[ENA]
¡û
>W2011659086
SOEJ01000022
Alphaproteobacteria
Methylosinus sp. sav-2 [SOEJ]
3279
3205
-
Gln
TTG
[ENA]
¡û
>W2011663089
SOPH01000001
Alphaproteobacteria
Methylocystis heyeri H2 [SOPH]
324798
324872
+
Gln
TTG
[ENA]
¡û
>W2012061559
VJMF01000030
Alphaproteobacteria
Methylosinus sporium SM89A [VJMF]
800
726
-
Gln
TTG
[ENA]
¡û
>W2012408120
WOVC01000015
Alphaproteobacteria
Methylosinus sp. RM1 [WOVC]
99942
100016
+
Gln
TTG
[ENA]
¡û
>W2110019138
BMCP01000001
Alphaproteobacteria
Agaricicola taiwanensis CCM 7684 [BMCP]
1296473
1296547
+
Gln
TTG
[ENA]
¡û
>W2110358631
JADNQW010000005
Alphaproteobacteria
Methylosinus sp. H3A [JADNQW]
2766568
2766494
-
Gln
TTG
[ENA]
¡û
>W2110358670
JADNQX010000030
Alphaproteobacteria
Methylocystis sp. H15 [JADNQX]
203362
203436
+
Gln
TTG
[ENA]
¡û
>W2110358728
JADNQY010000026
Alphaproteobacteria
Methylocystis sp. H4A [JADNQY]
277113
277039
-
Gln
TTG
[ENA]
¡û
>W2110358770
JADNQZ010000053
Alphaproteobacteria
Methylocystis sp. H62 [JADNQZ]
147953
147879
-
Gln
TTG
[ENA]
¡û
>W2110358800
JADNRA010000019
Alphaproteobacteria
Methylocystis sp. L43 [JADNRA]
62302
62376
+
Gln
TTG
[ENA]
¡û
>W2110446718
JAERVJ010000009
Alphaproteobacteria
Methylocystis sp. Sn-Cys [JAERVJ]
213510
213584
+
Gln
TTG
[ENA]
¡û
>W2110610177
JAHKJX010000001
Alphaproteobacteria
Methylocystis sp. MJC1 [JAHKJX]
2932997
2933071
+
Gln
TTG
[ENA]
¡û
>W2110617604
JAHLJF010000001
Alphaproteobacteria
Methylosinus sp. KRF6 [JAHLJF]
102926
103000
+
Gln
TTG
[ENA]
¡û
>W2110687557
JAINDZ010000002
Alphaproteobacteria
Methylosinus sp. Sm6 [JAINDZ]
10027
10101
+
Gln
TTG
[ENA]
¡û
>C231326011
CP092968
Alphaproteobacteria
Methylocystis parvus OBBP [CP092968]
3181072
3180998
-
Gln
TTG
-
¡û
>C231516803
CP107558
Alphaproteobacteria
Methylocystis sp. MJC1 [CP107558]
2932997
2933071
+
Gln
TTG
-
¡û
>C241005254
AP022332
Alphaproteobacteria
Methylosinus sp. C49 [AP022332]
3334104
3334178
+
Gln
TTG
-
¡û
>C241088217
CP044328
Alphaproteobacteria
Methylocystis rosea BRCS1 [CP044328]
1434891
1434817
-
Gln
TTG
-
¡û
>C241088238
CP044331
Alphaproteobacteria
Methylocystis parvus BRCS2 [CP044331]
896436
896510
+
Gln
TTG
-
¡û
>W10118843
ADVE01000062
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
23595
23669
+
Gln
TTG
[ENA]
¡û
>C241105174
CP046052
Alphaproteobacteria
Methylocystis heyeri H2 [CP046052]
60190
60264
+
Gln
TTG
-
¡û
>C241131983
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
3572987
3573061
+
Gln
TTG
-
¡û
>C241237345
CP119869
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP119869]
3739007
3739081
+
Gln
TTG
-
¡û
>C241374019
CP143314
Alphaproteobacteria
Methylocystis iwaonis SD4 [CP143314]
951092
951018
-
Gln
TTG
-
¡û
>W2310021612
BSEC01000001
Alphaproteobacteria
Methylocystis echinoides LMG27198 [BSEC]
4119990
4119916
-
Gln
TTG
[ENA]
¡û
>W11125015
ADVE01000062
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
23595
23669
+
Gln
TTG
[ENA]
¡û
>W11150245
AEVM01000014
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
13287
13361
+
Gln
TTG
[ENA]
¡û
>W121067986
AJTV01000015
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
86890
86816
-
Gln
TTG
[ENA]
¡û
>C131019920
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
2654761
2654835
+
Gln
TTG
[Ensembl]
¡û
>W1610941048
LUUM01000301
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
756
682
-
Gln
TTG
[ENA]
¡û
>W1611012771
LXWX01000081
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
23613
23687
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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