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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.737007 (71 seq.)
>W131010894
AHYV01000016
Bacillota
Enterococcus avium ATCC 14025 [AHYV]
23851
23778
-
Arg
CCG
[ENA]
¡û
>W131202043
ASWL01000008
Bacillota
Enterococcus avium ATCC 14025 [ASWL]
631230
631303
+
Arg
CCG
[ENA]
¡û
>W1711431571
MIJY01000001
Bacillota
Enterococcus termitis [MIJY]
174784
174709
-
Arg
CCG
[ENA]
¡û
>W1711431817
MIKC01000034
Bacillota
Enterococcus ureilyticus [MIKC]
95287
95213
-
Arg
CCG
[ENA]
¡û
>W1712067874
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
684913
684840
-
Arg
CCG
[ENA]
¡û
>W1712068856
NGLY01000001
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
1573627
1573700
+
Arg
CCG
[ENA]
¡û
>W1712096909
NIBK01000001
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
1216576
1216503
-
Arg
CCG
[ENA]
¡û
>W131027513
AJAK01000007
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
178546
178617
+
Arg
CCG
[ENA]
¡û
>W131201323
ASWA01000002
Bacillota
Enterococcus malodoratus ATCC 43197 [ASWA]
411853
411924
+
Arg
CCG
[ENA]
¡û
>WENV180163065
OAVH01000824
[OAVH] human gut metagenome; faeces
3707
3780
+
Arg
CCG
[ENA]
¡û
>WENV182401648
OIER01004811
[OIER] human gut metagenome; human gut
3145
3218
+
Arg
CCG
[ENA]
¡û
>WENV182800043
OJTY01000337
[OJTY] human gut metagenome; human gut
8645
8718
+
Arg
CCG
[ENA]
¡û
>WENV182800644
OJUF01000141
[OJUF] human gut metagenome; human gut
3204
3131
-
Arg
CCG
[ENA]
¡û
>WENV182807682
OJVY01000126
[OJVY] human gut metagenome; human gut
17338
17265
-
Arg
CCG
[ENA]
¡û
>WENV182812333
OJXS01000135
[OJXS] human gut metagenome; human gut
24460
24533
+
Arg
CCG
[ENA]
¡û
>WENV182823164
OKBS01000178
[OKBS] human gut metagenome; human gut
28724
28797
+
Arg
CCG
[ENA]
¡û
>WENV182823739
OKBW01001990
[OKBW] human gut metagenome; human gut
900
971
+
Arg
CCG
[ENA]
¡û
>WENV182828046
OKDE01005168
[OKDE] human gut metagenome; human gut
426
355
-
Arg
CCG
[ENA]
¡û
>WENV182845183
OKJA01000131
[OKJA] human gut metagenome; human gut
26090
26163
+
Arg
CCG
[ENA]
¡û
>WENV182848582
OKKI01000062
[OKKI] human gut metagenome; human gut
26799
26872
+
Arg
CCG
[ENA]
¡û
>WENV182849049
OKKN01000228
[OKKN] human gut metagenome; human gut
740
667
-
Arg
CCG
[ENA]
¡û
>WENV182862190
OKPK01000141
[OKPK] human gut metagenome; human gut
26090
26163
+
Arg
CCG
[ENA]
¡û
>WENV182863643
OKPU01000174
[OKPU] human gut metagenome; human gut
26759
26832
+
Arg
CCG
[ENA]
¡û
>WENV182963043
OKWP01000125
[OKWP] human gut metagenome; stool
43258
43185
-
Arg
CCG
[ENA]
¡û
>WENV170540554
CWHE01000034
[CWHE] human gut metagenome; ENVO:feces
25124
25197
+
Arg
CCG
[ENA]
¡û
>C181194613
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
749692
749619
-
Arg
CCG
-
¡û
>C191120834
CP034169
Bacillota
Enterococcus avium 352 [CP034169]
2669270
2669197
-
Arg
CCG
-
¡û
>W1910177241
BJDP01000006
Bacillota
Enterococcus sp. 241-2-2 [BJDP]
102791
102718
-
Arg
CCG
[ENA]
¡û
>W1910177292
BJDQ01000004
Bacillota
Enterococcus sp. 63-4 [BJDQ]
74536
74609
+
Arg
CCG
[ENA]
¡û
>W1910177638
BJDX01000003
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
102074
102001
-
Arg
CCG
[ENA]
¡û
>W1910177930
BJED01000008
Bacillota
Enterococcus sp. 190-7 [BJED]
203410
203483
+
Arg
CCG
[ENA]
¡û
>W1910914576
NHTL01000007
Bacillota
Enterococcus ureilyticus CCUG 48799 [NHTL]
81030
81104
+
Arg
CCG
[ENA]
¡û
>W1810045340
NBSL01000002
Bacillota
Enterococcus avium FDAARGOS_182 [NBSL]
1527874
1527947
+
Arg
CCG
[ENA]
¡û
>W1810817909
QSCV01000006
Bacillota
Enterococcus avium OF02-3AC [QSCV]
93476
93549
+
Arg
CCG
[ENA]
¡û
>W2010090618
BJDP01000006
Bacillota
Enterococcus sp. 241-2-2 [BJDP]
102791
102718
-
Arg
CCG
[ENA]
¡û
>W2010090669
BJDQ01000004
Bacillota
Enterococcus sp. 63-4 [BJDQ]
74536
74609
+
Arg
CCG
[ENA]
¡û
>W2010091015
BJDX01000003
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
102074
102001
-
Arg
CCG
[ENA]
¡û
>W2010091307
BJED01000008
Bacillota
Enterococcus sp. 190-7 [BJED]
203410
203483
+
Arg
CCG
[ENA]
¡û
>W2010159999
CAAKNX010000125
Bacillota
Enterococcus avium [CAAKNX]
25124
25197
+
Arg
CCG
[ENA]
¡û
>W2010278260
CABMET010000006
Bacillota
Enterococcus avium [CABMET]
93476
93549
+
Arg
CCG
[ENA]
¡û
>W2010967597
NHTL01000007
Bacillota
Enterococcus ureilyticus CCUG 48799 [NHTL]
81030
81104
+
Arg
CCG
[ENA]
¡û
>W2011188174
PDXQ01000001
Bacillota
Enterococcus avium FDAARGOS_185 [PDXQ]
1170917
1170844
-
Arg
CCG
[ENA]
¡û
>W2011320362
QWLG01000015
Bacillota
Enterococcus asini J2 [QWLG]
57629
57556
-
Arg
CCG
[ENA]
¡û
>W2011509851
RYZS01000001
Bacillota
Enterococcus avium LC0559/18 [RYZS]
2617253
2617326
+
Arg
CCG
[ENA]
¡û
>W2011760104
UARP01000001
Bacillota
Enterococcus malodoratus NCTC12366 [UARP]
139738
139809
+
Arg
CCG
[ENA]
¡û
>W2011821733
UFXU01000001
Bacillota
Enterococcus malodoratus NCTC12365 [UFXU]
772846
772775
-
Arg
CCG
[ENA]
¡û
>W2011825699
UGIH01000002
Bacillota
Enterococcus avium NCTC9938 [UGIH]
823813
823740
-
Arg
CCG
[ENA]
¡û
>W2012481605
WWRN01000025
Bacillota
Enterococcus avium BIOML-A4 [WWRN]
21034
20961
-
Arg
CCG
[ENA]
¡û
>W2012481665
WWRO01000024
Bacillota
Enterococcus avium BIOML-A3 [WWRO]
21034
20961
-
Arg
CCG
[ENA]
¡û
>W2012481721
WWRP01000025
Bacillota
Enterococcus avium BIOML-A2 [WWRP]
21034
20961
-
Arg
CCG
[ENA]
¡û
>W2012481780
WWRQ01000025
Bacillota
Enterococcus avium BIOML-A1 [WWRQ]
21034
20961
-
Arg
CCG
[ENA]
¡û
>W2110074855
CABGUH010000016
Bacillota
Enterococcus avium 4928STDY7071631 [CABGUH]
78338
78411
+
Arg
CCG
[ENA]
¡û
>W2110462086
JAFBEZ010000007
Bacillota
Enterococcus ureilyticus DSM 102981 [JAFBEZ]
81164
81238
+
Arg
CCG
[ENA]
¡û
>W2110462390
JAFBFE010000003
Bacillota
Enterococcus xiangfangensis DSM 105127 [JAFBFE]
102092
102019
-
Arg
CCG
[ENA]
¡û
>W2110512791
JAFLVR010000018
Bacillota
Enterococcus sp. MJM16 [JAFLVR]
7687
7614
-
Arg
CCG
[ENA]
¡û
>W2110512919
JAFLVV010000023
Bacillota
Enterococcus hulanensis DIV0164 [JAFLVV]
192002
192075
+
Arg
CCG
[ENA]
¡û
>W2110512944
JAFLVW010000014
Bacillota
Enterococcus hulanensis DIV0645b [JAFLVW]
112015
111942
-
Arg
CCG
[ENA]
¡û
>W2110513206
JAFLWD010000014
Bacillota
Enterococcus sp. DIV0869a [JAFLWD]
26320
26246
-
Arg
CCG
[ENA]
¡û
>W2110513219
JAFLWE010000006
Bacillota
Enterococcus ureilyticus DIV0896c [JAFLWE]
1815
1741
-
Arg
CCG
[ENA]
¡û
>W2110620543
JAHLOS010000004
Bacillota
Enterococcus raffinosus N17 [JAHLOS]
9535
9462
-
Arg
CCG
[ENA]
¡û
>W2110620746
JAHLOV010000002
Bacillota
Enterococcus devriesei N6 [JAHLOV]
144339
144266
-
Arg
CCG
[ENA]
¡û
>C201004501
AP019814
Bacillota
Enterococcus avium G-15 [AP019814]
2315693
2315764
+
Arg
CCG
-
¡û
>C241026858
CP024590
Bacillota
Enterococcus avium FDAARGOS_184 [CP024590]
719942
720015
+
Arg
CCG
-
¡û
>W2130011108
JAASJS010000041
Bacillota
Enterococcus gilvus K61 [JAASJS]
304
231
-
Arg
CCG
[ENA]
¡û
>C161058472
CP013655
Bacillota
Enterococcus rotai LMG 26678 [CP013655]
2086981
2086906
-
Arg
CCG
-
¡û
>W1710553545
FOHR01000020
Bacillota
Enterococcus malodoratus kppr-6 [FOHR]
28784
28855
+
Arg
CCG
[ENA]
¡û
>W1710659119
JXKF01000045
Bacillota
Enterococcus avium [JXKF]
18200
18273
+
Arg
CCG
[ENA]
¡û
>W1710659275
JXKM01000002
Bacillota
Enterococcus devriesei [JXKM]
68336
68263
-
Arg
CCG
[ENA]
¡û
>W1710659440
JXKQ01000011
Bacillota
Enterococcus hermanniensis [JXKQ]
30112
30041
-
Arg
CCG
[ENA]
¡û
>W1710659568
JXKU01000012
Bacillota
Enterococcus malodoratus [JXKU]
60479
60550
+
Arg
CCG
[ENA]
¡û
>W1710659929
JXLF01000001
Bacillota
Enterococcus termitis [JXLF]
414020
414095
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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