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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7377 (19 seq.)
>W1710880260
LMSF01000012
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
75603
75697
+
SeC(p)
TCA
[ENA]
¡û
>W1710880405
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
163723
163817
+
SeC(p)
TCA
[ENA]
¡û
>W131172164
ARGS01000040
Actinomycetota
Arthrobacter sp. 162MFSha1.1 [ARGS]
53409
53315
-
SeC(p)
TCA
[ENA]
¡û
>WENV180016383
FSUT01000543
[FSUT] metagenome; soil
7730
7824
+
SeC
TCA
[ENA]
¡û
>C191188244
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
3348673
3348579
-
Sec
TCA
-
¡û
>C191188521
CP041198
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502770 [CP041198]
1475642
1475736
+
Sec
TCA
-
¡û
>W2010598907
JABFMW010000006
Actinomycetota
Pseudarthrobacter sp. C4D7 [JABFMW]
96656
96562
-
SeC
TCA
[ENA]
¡û
>W2011654546
SOBD01000010
Actinomycetota
Arthrobacter sp. 1704 [SOBD]
112593
112499
-
SeC
TCA
[ENA]
¡û
>W2012017819
VFMS01000001
Actinomycetota
Arthrobacter sp. M29 [VFMS]
3910698
3910792
+
SeC
TCA
[ENA]
¡û
>W2012017933
VFMU01000001
Actinomycetota
Arthrobacter sp. IMM11 [VFMU]
3119312
3119406
+
SeC
TCA
[ENA]
¡û
>W2012019355
VFNR01000001
Actinomycetota
Arthrobacter sp. 32-OD9 [VFNR]
3813863
3813769
-
SeC
TCA
[ENA]
¡û
>W2012046503
VIVE01000001
Actinomycetota
Arthrobacter sp. AG367 [VIVE]
349317
349411
+
SeC
TCA
[ENA]
¡û
>C211025128
AP024650
Actinomycetota
Arthrobacter sp. StoSoilB19 [AP024650]
2027322
2027416
+
SeC
TCA
-
¡û
>C211025380
AP024657
Actinomycetota
Arthrobacter sp. NicSoilB11 [AP024657]
2020441
2020535
+
SeC
TCA
-
¡û
>C231550382
CP113505
Actinomycetota
Arthrobacter sp. FX8 [CP113505]
1362004
1362098
+
SeC
TCA
-
¡û
>W1511489594
JWTB01000005
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
171072
171166
+
SeC
TCA
[ENA]
¡û
>W1610742606
LMSF01000012
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
75603
75697
+
SeC(p)
TCA
[ENA]
¡û
>W1610742751
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
163723
163817
+
SeC(p)
TCA
[ENA]
¡û
>W1710521089
FNGC01000010
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
216846
216752
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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