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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73830 (35 seq.)
>W131156051
AQPB01000059
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
45231
45145
-
Leu
CAA
[ENA]
¡û
>W131161732
AQXY01000031
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
99620
99706
+
Leu
CAA
[ENA]
¡û
>W131163152
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
200194
200280
+
Leu
CAA
[ENA]
¡û
>W131173880
ARIA01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALE25 [ARIA]
123884
123798
-
Leu
CAA
[ENA]
¡û
>W131173912
ARIB01000007
Gammaproteobacteria
Thioalkalivibrio sp. ALJ10 [ARIB]
5655
5741
+
Leu
CAA
[ENA]
¡û
>W131174031
ARID01000029
Gammaproteobacteria
Thioalkalivibrio sp. ALJ16 [ARID]
10518
10432
-
Leu
CAA
[ENA]
¡û
>W131174171
ARIG01000019
Gammaproteobacteria
Thioalkalivibrio sp. ALE31 [ARIG]
37934
37848
-
Leu
CAA
[ENA]
¡û
>W131174195
ARIH01000028
Gammaproteobacteria
Thioalkalivibrio sp. ALE28 [ARIH]
83901
83987
+
Leu
CAA
[ENA]
¡û
>W131174258
ARII01000026
Gammaproteobacteria
Thioalkalivibrio sp. ALE9 [ARII]
376181
376095
-
Leu
CAA
[ENA]
¡û
>W131174297
ARIJ01000018
Gammaproteobacteria
Thioalkalivibrio sp. ALE30 [ARIJ]
590014
590100
+
Leu
CAA
[ENA]
¡û
>W131174331
ARIK01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE27 [ARIK]
338784
338870
+
Leu
CAA
[ENA]
¡û
>W131175395
ARJF01000016
Gammaproteobacteria
Thioalkalivibrio sp. ALMg11 [ARJF]
319181
319267
+
Leu
CAA
[ENA]
¡û
>W131175472
ARJH01000042
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
10163
10077
-
Leu
CAA
[ENA]
¡û
>W131178072
ARLG01000028
Gammaproteobacteria
Thioalkalivibrio sp. ALE12 [ARLG]
15073
14987
-
Leu
CAA
[ENA]
¡û
>W131178372
ARLN01000006
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
459235
459321
+
Leu
CAA
[ENA]
¡û
>W131178546
ARLQ01000036
Gammaproteobacteria
Thioalkalivibrio sp. ALE16 [ARLQ]
97499
97413
-
Leu
CAA
[ENA]
¡û
>W131178848
ARLW01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE22 [ARLW]
5665
5579
-
Leu
CAA
[ENA]
¡û
>W131178915
ARLY01000016
Gammaproteobacteria
Thioalkalivibrio sp. ALgr5 [ARLY]
56620
56706
+
Leu
CAA
[ENA]
¡û
>W131214690
ATUK01000001
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
48736
48650
-
Leu
CAA
[ENA]
¡û
>W131225648
AUDT01000004
Gammaproteobacteria
Thioalkalivibrio sp. ALE17 [AUDT]
45557
45471
-
Leu
CAA
[ENA]
¡û
>W141022597
AJUE01000014
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila ATCC 51935 [AJUE]
125982
126068
+
Leu
CAA
[ENA]
¡û
>WENV180298613
OBJA01472331
[OBJA] soil metagenome; sediment, water from around vicinity
259
173
-
Leu
CAA
[ENA]
¢þ
>WENV170176382
CEOS01070389
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
628
712
+
Leu
CAA
[ENA]
¢þ
>WENV170372449
CETS01097501
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
167
253
+
Leu
CAA
[ENA]
¢þ
>WENV170379889
CETV01249055
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
764
850
+
Leu
CAA
[ENA]
¢þ
>WENV170822959
MDSY01049262
[MDSY] marine metagenome; seawater
13347
13261
-
Leu
CAA
[ENA]
¢þ
>W09113257
ABYM01000013
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
56707
56621
-
Leu
CAA
[ENA]
¡û
>C09110621
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
2197080
2196994
-
Leu
CAA
[Ensembl]
¡û
>C151016192
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
1256069
1255983
-
Leu
CAA
[Ensembl]
¡û
>W11178595
AGFB01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
10492
10406
-
Leu
CAA
[ENA]
¡û
>C161005772
CP007268
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila A [CP007268]
2258888
2258974
+
Leu
CAA
-
¡û
>C161038433
CP011994
Gammaproteobacteria
Ectothiorhodospira sp. BSL-9 [CP011994]
3499102
3499188
+
Leu
CAA
[Ensembl]
¡û
>C131010926
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
2296756
2296842
+
Leu
CAA
[Ensembl]
¡û
>W1710543502
FOAA01000001
Gammaproteobacteria
Ectothiorhodospira marina [FOAA]
271933
271847
-
Leu
CAA
[ENA]
¡û
>W1710569638
FOUO01000021
Gammaproteobacteria
Ectothiorhodospira mobilis [FOUO]
29440
29354
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK