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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73874 (76 seq.)
>W1711066572
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
155238
155324
+
Leu
CAG
[ENA]
¡û
>W1711092559
LTEE01000083
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
14453
14537
+
Leu
CAG
[ENA]
¡û
>W1711093844
LTFJ01000010
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
76752
76836
+
Leu
CAG
[ENA]
¡û
>W1711095121
LTGN01000029
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
1746
1662
-
Leu
CAG
[ENA]
¡û
>W1711096241
LTHP01000016
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
48613
48697
+
Leu
CAG
[ENA]
¡û
>W1711096294
LTHQ01000011
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
7200
7116
-
Leu
CAG
[ENA]
¡û
>W1711096995
LTIG01000043
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
13262
13346
+
Leu
CAG
[ENA]
¡û
>W1711097542
LTIU01000021
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
16358
16442
+
Leu
CAG
[ENA]
¡û
>W1711098044
LTJF01000027
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
15859
15943
+
Leu
CAG
[ENA]
¡û
>W1711098565
LTJR01000019
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
76986
77070
+
Leu
CAG
[ENA]
¡û
>W1711099056
LTKD01000030
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
76668
76752
+
Leu
CAG
[ENA]
¡û
>W1711099347
LTKK01000027
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
80783
80867
+
Leu
CAG
[ENA]
¡û
>W1711102255
LTNP01000008
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
13246
13330
+
Leu
CAG
[ENA]
¡û
>W1711102307
LTNQ01000008
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
15903
15819
-
Leu
CAG
[ENA]
¡û
>W1711102369
LTNR01000035
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
76865
76949
+
Leu
CAG
[ENA]
¡û
>W1711102425
LTNS01000027
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
224
140
-
Leu
CAG
[ENA]
¡û
>W1711102456
LTNT01000003
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
60874
60958
+
Leu
CAG
[ENA]
¡û
>W1711102554
LTNU01000077
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
224
140
-
Leu
CAG
[ENA]
¡û
>W1711102561
LTNV01000016
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
13232
13316
+
Leu
CAG
[ENA]
¡û
>W1711103284
LTOO01000020
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
16268
16184
-
Leu
CAG
[ENA]
¡û
>W1711103450
LTOS01000029
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
92859
92775
-
Leu
CAG
[ENA]
¡û
>W1711107019
LTSJ01000036
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
13154
13238
+
Leu
CAG
[ENA]
¡û
>W1711110055
LTVE01000038
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
102239
102155
-
Leu
CAG
[ENA]
¡û
>W1711112793
LTXS01000025
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
80803
80887
+
Leu
CAG
[ENA]
¡û
>W1711113425
LTYH01000016
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
120439
120355
-
Leu
CAG
[ENA]
¡û
>W1711114822
LTZQ01000003
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
14131
14215
+
Leu
CAG
[ENA]
¡û
>W1711114953
LTZS01000051
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
89830
89914
+
Leu
CAG
[ENA]
¡û
>W1711186798
LWON01000004
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
84909
84993
+
Leu
CAG
[ENA]
¡û
>W1711187919
LWPW01000109
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
42984
42900
-
Leu
CAG
[ENA]
¡û
>W1711427590
MIFV01000002
Actinomycetota
Corynebacterium amycolatum [MIFV]
77113
77197
+
Leu
CAG
[ENA]
¡û
>W1711507475
MKXS01000004
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
13241
13325
+
Leu
CAG
[ENA]
¡û
>W1711724035
MTPT01000055
Actinomycetota
Corynebacterium amycolatum [MTPT]
331
247
-
Leu
CAG
[ENA]
¡û
>W131000438
AGEM01000005
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
86498
86582
+
Leu
CAG
[ENA]
¡û
>W131159200
AQUW01000001
Actinomycetota
Corynebacterium ciconiae DSM 44920 [AQUW]
100265
100349
+
Leu
CAG
[ENA]
¡û
>W141008935
AHAE01000082
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
49359
49275
-
Leu
CAG
[ENA]
¡û
>WENV180554382
OCJN01000232
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
13251
13335
+
Leu
CAG
[ENA]
¢þ
>WENV180765535
ODIC01000029
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
17411
17327
-
Leu
CAG
[ENA]
¢þ
>WENV180984430
ODVG01000601
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
982
1066
+
Leu
CAG
[ENA]
¢þ
>WENV181131674
OEGD01001401
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
808
892
+
Leu
CAG
[ENA]
¢þ
>WENV181326399
OFLL01000297
[OFLL] metagenome; faeces
4045
3961
-
Leu
CAG
[ENA]
¢þ
>WENV181810206
OGSU01005254
[OGSU] human gut metagenome; fecal sample 7 from infant 5
232
316
+
Leu
CAG
[ENA]
¢þ
>W141243966
CAJZ01000185
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
15971
16055
+
Leu
CAG
[ENA]
¡û
>WENV182628955
OJKR01000109
[OJKR] metagenome; surface
19659
19575
-
Leu
CAG
[ENA]
¢þ
>WENV182636270
OJKZ01001869
[OJKZ] metagenome; surface
6870
6786
-
Leu
CAG
[ENA]
¢þ
>WENV182640095
OJLB01000244
[OJLB] metagenome; surface
12204
12120
-
Leu
CAG
[ENA]
¢þ
>WENV182641173
OJLE01017747
[OJLE] metagenome; surface
710
794
+
Leu
CAG
[ENA]
¢þ
>WENV182641856
OJLK01004357
[OJLK] metagenome; surface
770
854
+
Leu
CAG
[ENA]
¢þ
>WENV182643106
OJLS01000930
[OJLS] metagenome; surface
1425
1509
+
Leu
CAG
[ENA]
¢þ
>WENV182643647
OJLW01000357
[OJLW] metagenome; surface
7063
7147
+
Leu
CAG
[ENA]
¢þ
>WENV182645642
OJLZ01000204
[OJLZ] metagenome; surface
6751
6667
-
Leu
CAG
[ENA]
¢þ
>WENV182646392
OJMA01010689
[OJMA] metagenome; surface
199
115
-
Leu
CAG
[ENA]
¢þ
>WENV182671625
OJNM01000602
[OJNM] metagenome; surface
9141
9057
-
Leu
CAG
[ENA]
¢þ
>WENV182803010
OJUH01000068
[OJUH] human gut metagenome; human gut
20590
20674
+
Leu
CAG
[ENA]
¢þ
>WENV182815552
OJYR01000898
[OJYR] human gut metagenome; human gut
2217
2133
-
Leu
CAG
[ENA]
¢þ
>WENV182820816
OKAP01000305
[OKAP] human gut metagenome; human gut
2303
2219
-
Leu
CAG
[ENA]
¢þ
>WENV182835522
OKFO01000055
[OKFO] human gut metagenome; human gut
32021
31937
-
Leu
CAG
[ENA]
¢þ
>WENV182837569
OKGJ01000280
[OKGJ] human gut metagenome; human gut
6819
6903
+
Leu
CAG
[ENA]
¢þ
>C181056543
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
1960216
1960300
+
Leu
CAG
-
¡û
>C191111878
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
76933
77017
+
Leu
CAG
-
¡û
>W09114665
ABZU01000025
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
160
76
-
Leu
CAG
[ENA]
¡û
>C09103313
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
174972
175058
+
Leu
CAG
[Ensembl]
¡û
>W1911596609
PNHH01000009
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
68555
68471
-
Leu
CAG
[ENA]
¡û
>W1810187620
PKHS01000006
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
76787
76871
+
Leu
CAG
[ENA]
¡û
>W1810187679
PKHT01000017
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
274
190
-
Leu
CAG
[ENA]
¡û
>C151013218
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
29256
29340
+
Leu
CAG
-
¡û
>C151039852
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1247048
1247132
+
Leu
CAG
[Ensembl]
¡û
>W1511442776
JUSD01000039
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
218
134
-
Leu
CAG
[ENA]
¡û
>W1511457801
JVIP01000020
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
54499
54415
-
Leu
CAG
[ENA]
¡û
>W1511463611
JVOW01000031
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
134406
134322
-
Leu
CAG
[ENA]
¡û
>W1511464326
JVPT01000070
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
1540
1456
-
Leu
CAG
[ENA]
¡û
>W1511469485
JVVM01000033
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
119669
119585
-
Leu
CAG
[ENA]
¡û
>W1511476409
JWEP01000023
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
13343
13427
+
Leu
CAG
[ENA]
¡û
>W1511523802
JYCR01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
56023
56109
+
Leu
CAG
[ENA]
¡û
>W1511523973
JYDD01000009
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
55975
56061
+
Leu
CAG
[ENA]
¡û
>W1511595752
LBNF01000015
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
16148
16232
+
Leu
CAG
[ENA]
¡û
>W1610907142
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
155238
155324
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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