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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.739654 (29 seq.)
>W1711394830
MERS01000020
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
9796
9722
-
Arg
CCT
[ENA]
¡û
>W1711394870
MERT01000027
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
9822
9748
-
Arg
CCT
[ENA]
¡û
>W1711751699
MUNZ01000028
Betaproteobacteria
Hydrogenophaga sp. A37 [MUNZ]
2856
2782
-
Arg
CCT
[ENA]
¡û
>C017363
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1261459
1261385
-
Arg
CCT
[Ensembl]
¡û
>WENV180033764
FTKL01123540
[FTKL] metagenome; soil
339
413
+
Arg
CCT
[ENA]
¡û
>WENV181371956
OFQW01004041
[OFQW] wastewater metagenome; Exp Tend NO 90WW
135
61
-
Arg
CCT
[ENA]
¡û
>WENV181392037
OFRV01004851
[OFRV] freshwater metagenome; Freshwater Lake
168
242
+
Arg
CCT
[ENA]
¡û
>C08007677
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1261459
1261388
-
Arg
CCT
[Ensembl]
¡û
>WENV170639785
JFJP01007779
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1070
996
-
Arg
CCT
[ENA]
¡û
>WENV170710727
LNFM01002494
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
62933
62859
-
Arg
CCT
[ENA]
¡û
>W09101602
AAFQ02000002
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
286005
286079
+
Arg
CCT
[ENA]
¡û
>W1910699846
MERX01000606
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
3425
3351
-
Arg
CCT
[ENA]
¡û
>W1910700019
MESC01000403
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_67_38 [MESC]
813
887
+
Arg
CCT
[ENA]
¡û
>W2010833272
MERX01000606
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
3425
3351
-
Arg
CCT
[ENA]
¡û
>W2010833445
MESC01000403
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_67_38 [MESC]
813
887
+
Arg
CCT
[ENA]
¡û
>W2012207466
VYGV01000005
Betaproteobacteria
Hydrogenophaga sp. D2P1 [VYGV]
97709
97783
+
Arg
CCT
[ENA]
¡û
>W2110563366
JAGPWB010000073
Betaproteobacteria
Hydrogenophaga aromaticivorans D2P3 [JAGPWB]
7418
7344
-
Arg
CCT
[ENA]
¡û
>C231139708
CP075183
Betaproteobacteria
Hydrogenophaga taeniospiralis LT2 [CP075183]
1018767
1018693
-
Arg
CCT
-
¡û
>C231247360
CP087963
Betaproteobacteria
Polaromonas sp. P1(28)-13 [CP087963]
4010375
4010301
-
Arg
CCT
-
¡û
>C231247412
CP087964
Betaproteobacteria
Polaromonas sp. P1(28)-8 [CP087964]
1292197
1292123
-
Arg
CCT
-
¡û
>C231247435
CP087965
Betaproteobacteria
Polaromonas sp. P2-4 [CP087965]
3814153
3814079
-
Arg
CCT
-
¡û
>C231247454
CP087966
Betaproteobacteria
Polaromonas sp. P1-6 [CP087966]
1570335
1570409
+
Arg
CCT
-
¡û
>WENV059092
AACY023353462
Marine microbial communities from Global Ocean Sampling (GOS)
447
373
-
Arg
CCT
[ENA]
>W121084934
AKIV01000139
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
1446
1520
+
Arg
CCT
[ENA]
¡û
>W1610076186
BCYO01000001
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
466521
466447
-
Arg
CCT
[ENA]
¡û
>W1710074001
BCYO01000001
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
466521
466447
-
Arg
CCT
[ENA]
¡û
>W1710523402
FNHX01000003
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
437974
437900
-
Arg
CCT
[ENA]
¡û
>W1710557392
FOKZ01000007
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
148982
148908
-
Arg
CCT
[ENA]
¡û
>W1710578317
FPBM01000010
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
42023
42097
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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