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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.739927 (58 seq.)
>W1711229370
LXYJ01000029
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
11879
11805
-
Asn
GTT
[ENA]
¡û
>W1711511043
MLCB01000117
Alphaproteobacteria
Planktotalea frisia [MLCB]
42399
42473
+
Asn
GTT
[ENA]
¡û
>C011099
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
1818025
1817951
-
Asn
GTT
[Ensembl]
¡û
>WENV180102764
OAOZ01011730
[OAOZ] marine metagenome; ENVO:00002010
214
140
-
Asn
GTT
[ENA]
¡û
>WENV180214755
OBAP01064959
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
320
246
-
Asn
GTT
[ENA]
¡û
>WENV180398055
OBPZ01064006
[OBPZ] marine metagenome; ENVO:00002010
158
84
-
Asn
GTT
[ENA]
¡û
>W08011113
ABSH01000024
Alphaproteobacteria
Octadecabacter antarcticus 307 [ABSH]
408400
408474
+
Asn
GTT
[ENA]
¡û
>W08011253
ABSK01000044
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
11034
10963
-
Asn
GTT
[ENA]
¡û
>WENV181322700
OFKT01032090
[OFKT] marine metagenome; sea ice
438
364
-
Asn
GTT
[ENA]
¡û
>WENV181325675
OFLJ01013563
[OFLJ] seawater metagenome; seawater
825
751
-
Asn
GTT
[ENA]
¡û
>WENV182564908
OJEF01014275
[OJEF] seawater metagenome; Sea water
1241
1315
+
Asn
GTT
[ENA]
¡û
>WENV183615605
OOEB01056422
[OOEB] marine metagenome; sea ice
155
229
+
Asn
GTT
[ENA]
¡û
>WENV183617545
OOEG01007157
[OOEG] marine metagenome; sea ice
241
167
-
Asn
GTT
[ENA]
¡û
>WENV183625491
OOGF01043371
[OOGF] marine metagenome; seawater
89
15
-
Asn
GTT
[ENA]
¡û
>WENV183628292
OOGN01005269
[OOGN] marine metagenome; sea ice
318
244
-
Asn
GTT
[ENA]
¡û
>WENV183628704
OOGO01009473
[OOGO] marine metagenome; sea ice
824
898
+
Asn
GTT
[ENA]
¡û
>WENV170311359
CESM01133176
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
140
66
-
Asn
GTT
[ENA]
¡û
>WENV170341641
CETD01025552
[CETD] marine metagenome genome assembly TARA_110_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
146
72
-
Asn
GTT
[ENA]
¡û
>WENV170569495
FLMP01217519
[FLMP] seawater metagenome; seawater
82
8
-
Asn
GTT
[ENA]
¡û
>WENV170608255
FUWD010909000
[FUWD] metagenome; unknown
26
100
+
Asn
GTT
[ENA]
¡û
>WENV170783865
MAAC01019255
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
550
476
-
Asn
GTT
[ENA]
¡û
>WENV170787346
MDSV01017115
[MDSV] marine metagenome; seawater
107
33
-
Asn
GTT
[ENA]
¡û
>W09102746
AAIG01000004
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
88114
88040
-
Asn
GTT
[ENA]
¡û
>W09111674
ABXE01000019
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
362268
362342
+
Asn
GTT
[ENA]
¡û
>W1910285260
FREY01000004
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
325001
324927
-
Asn
GTT
[ENA]
¡û
>W1910285261
FREY01000004
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
307227
307153
-
Asn
GTT
[ENA]
¡û
>W1910443211
FWFW01000009
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
131065
131139
+
Asn
GTT
[ENA]
¡û
>W1910499680
FXYD01000001
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
537615
537689
+
Asn
GTT
[ENA]
¡û
>W1911538717
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
1312939
1312865
-
Asn
GTT
[ENA]
¡û
>W1810063495
PDUV01000009
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
189947
189873
-
Asn
GTT
[ENA]
¡û
>W1810063496
PDUV01000009
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
189824
189750
-
Asn
GTT
[ENA]
¡û
>W1810685707
QKZM01000029
Alphaproteobacteria
Planktotalea frisia DSM 23709 [QKZM]
2754
2680
-
Asn
GTT
[ENA]
¡û
>C151092038
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
1762694
1762768
+
Asn
GTT
-
¡û
>W2010395523
FREY01000004
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
325001
324927
-
Asn
GTT
[ENA]
¡û
>W2010395524
FREY01000004
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
307227
307153
-
Asn
GTT
[ENA]
¡û
>W2010406575
FWFW01000009
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
131065
131139
+
Asn
GTT
[ENA]
¡û
>W2010419383
FXYD01000001
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
537615
537689
+
Asn
GTT
[ENA]
¡û
>W2011168947
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
1312939
1312865
-
Asn
GTT
[ENA]
¡û
>W2011453402
RKQK01000001
Alphaproteobacteria
Pacificibacter maritimus DSM 104731 [RKQK]
747251
747325
+
Asn
GTT
[ENA]
¡û
>W2110303306
JADCKQ010000001
Alphaproteobacteria
Rhodobacteraceae bacterium MYP1-1 [JADCKQ]
439355
439429
+
Asn
GTT
[ENA]
¡û
>W2110603397
JAHHIR010000040
Alphaproteobacteria
Epibacterium ulvae 4A10 [JAHHIR]
2057
1983
-
Asn
GTT
[ENA]
¡û
>W2110603398
JAHHIR010000040
Alphaproteobacteria
Epibacterium ulvae 4A10 [JAHHIR]
1746
1672
-
Asn
GTT
[ENA]
¡û
>W2110611134
JAHKPF010000007
Alphaproteobacteria
Shimia thalassica G2R14 [JAHKPF]
227362
227436
+
Asn
GTT
[ENA]
¡û
>W2110611135
JAHKPF010000007
Alphaproteobacteria
Shimia thalassica G2R14 [JAHKPF]
227485
227559
+
Asn
GTT
[ENA]
¡û
>W2110612503
JAHKQI010000008
Alphaproteobacteria
Lentibacter algarum B3M08 [JAHKQI]
160717
160643
-
Asn
GTT
[ENA]
¡û
>W2110684004
JAIMBW010000001
Alphaproteobacteria
N5(2021) [JAIMBW]
494327
494253
-
Asn
GTT
[ENA]
¡û
>C211366969
CP079194
Alphaproteobacteria
Jannaschia sp. J12C1-MA-4 [CP079194]
2582055
2582129
+
Asn
GTT
-
¡û
>C231169351
CP081102
Alphaproteobacteria
Rhodobacteraceae bacterium M385 [CP081102]
1635038
1634964
-
Asn
GTT
-
¡û
>W2310024258
BSNN01000002
Alphaproteobacteria
Amylibacter marinus NBRC 110140 [BSNN]
298197
298271
+
Asn
GTT
[ENA]
¡û
>W1511479493
JWIF01000029
Alphaproteobacteria
Halocynthiibacter namhaensis RA2-3 [JWIF]
13082
13156
+
Asn
GTT
[ENA]
¡û
>WENV067915
AACY023707415
Marine microbial communities from Global Ocean Sampling (GOS)
636
560
-
Asn
GTT
[ENA]
>WENV067995
AACY023710051
Marine microbial communities from Global Ocean Sampling (GOS)
1072
1148
+
Asn
GTT
[ENA]
>W1610094583
CYTW01000001
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
2015380
2015454
+
Asn
GTT
[ENA]
¡û
>C131005929
CP003740
Alphaproteobacteria
Octadecabacter antarcticus 307 [CP003740]
2563914
2563988
+
Asn
GTT
[Ensembl]
¡û
>C131005994
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
1317527
1317453
-
Asn
GTT
[Ensembl]
¡û
>W1611013240
LXYJ01000029
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
11879
11805
-
Asn
GTT
[ENA]
¡û
>W1710543294
FNZV01000009
Alphaproteobacteria
Pacificibacter marinus [FNZV]
131033
131107
+
Asn
GTT
[ENA]
¡û
>W1710594934
FSRP01000001
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
1446488
1446562
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK