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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73996 (28 seq.)
>WENV181844210
OGVV01021476
[OGVV] freshwater metagenome; freshwater
534
446
-
Ser
TGA
[ENA]
¢þ
>WENV181844751
OGVW01025957
[OGVW] freshwater metagenome; freshwater
466
554
+
Ser
TGA
[ENA]
¢þ
>C08000262
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
2103636
2103724
+
Ser
TGA
[Ensembl]
¡û
>WENV170658112
JTFP01055848
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
510
422
-
Ser
TGA
[ENA]
¢þ
>C181225259
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
2103629
2103717
+
Ser
TGA
-
¡û
>C191084434
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2566100
2566012
-
Ser
TGA
-
¡û
>C191178279
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
2058071
2058159
+
Ser
TGA
-
¡û
>C141005640
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1984635
1984723
+
Ser
TGA
[Ensembl]
¡û
>W1910810930
MUXF01000016
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
57620
57532
-
Ser
TGA
[ENA]
¡û
>W1911426314
NXIG01000003
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
146192
146280
+
Ser
TGA
[ENA]
¡û
>W1911426370
NXIH01000003
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
63524
63612
+
Ser
TGA
[ENA]
¡û
>W1911426457
NXIJ01000001
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
51011
51099
+
Ser
TGA
[ENA]
¡û
>W1911576404
PDJZ01000005
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
148194
148282
+
Ser
TGA
[ENA]
¡û
>W1911746057
QVQX01000010
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
28693
28781
+
Ser
TGA
[ENA]
¡û
>W1911775179
QXMK01000006
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
76804
76716
-
Ser
TGA
[ENA]
¡û
>W1911775380
QXNB01000016
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
21161
21249
+
Ser
TGA
[ENA]
¡û
>C11100383
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1984620
1984708
+
Ser
TGA
[Ensembl]
¡û
>C11101054
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2724244
2724156
-
Ser
TGA
[Ensembl]
¡û
>W1510762835
JAIQ01000058
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
12781
12693
-
Ser
TGA
[ENA]
¡û
>W1510762869
JAIR01000048
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
143
231
+
Ser
TGA
[ENA]
¡û
>W1510762901
JAIS01000050
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
98
186
+
Ser
TGA
[ENA]
¡û
>W1510762937
JAIT01000028
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
100152
100240
+
Ser
TGA
[ENA]
¡û
>W1510762963
JAIU01000030
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
28919
29007
+
Ser
TGA
[ENA]
¡û
>W1510762983
JAIV01000038
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
33
121
+
Ser
TGA
[ENA]
¡û
>W1510763039
JAIW01000069
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
48228
48140
-
Ser
TGA
[ENA]
¡û
>W1510763069
JAIX01000080
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
98
186
+
Ser
TGA
[ENA]
¡û
>W11143304
AEPT01000038
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
21064
21152
+
Ser
TGA
[ENA]
¡û
>W11167750
AFNL01000006
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
57283
57195
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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