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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74062 (85 seq.)
>W1710906840
LNOH01000021
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
322821
322737
-
Leu
GAG
[ENA]
¡û
>W1711117561
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
495839
495755
-
Leu
GAG
[ENA]
¡û
>W1711117592
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
291139
291223
+
Leu
GAG
[ENA]
¡û
>W1711117629
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
850353
850269
-
Leu
GAG
[ENA]
¡û
>W1711117666
LUDJ01000002
Bacteroidota
Riemerella anatipestifer [LUDJ]
11445
11529
+
Leu
GAG
[ENA]
¡û
>W1711117706
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
499601
499517
-
Leu
GAG
[ENA]
¡û
>W1711117736
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
121596
121680
+
Leu
GAG
[ENA]
¡û
>W1711117795
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
121474
121558
+
Leu
GAG
[ENA]
¡û
>W1711117831
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
121474
121558
+
Leu
GAG
[ENA]
¡û
>W1711117860
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
321339
321255
-
Leu
GAG
[ENA]
¡û
>W1711117891
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
121573
121657
+
Leu
GAG
[ENA]
¡û
>W1711117932
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
321338
321254
-
Leu
GAG
[ENA]
¡û
>W1711117974
LUDR01000008
Bacteroidota
Riemerella anatipestifer [LUDR]
99673
99589
-
Leu
GAG
[ENA]
¡û
>W1711118004
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
495908
495824
-
Leu
GAG
[ENA]
¡û
>W1711118045
LUDT01000019
Bacteroidota
Riemerella anatipestifer [LUDT]
32959
33043
+
Leu
GAG
[ENA]
¡û
>W1711118076
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
324302
324218
-
Leu
GAG
[ENA]
¡û
>W1711118107
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
177179
177263
+
Leu
GAG
[ENA]
¡û
>W1711300467
MAGZ01000017
Bacteroidota
Elizabethkingia meningoseptica [MAGZ]
102748
102664
-
Leu
GAG
[ENA]
¡û
>W1711300588
MAHC01000014
Bacteroidota
Elizabethkingia meningoseptica [MAHC]
242693
242609
-
Leu
GAG
[ENA]
¡û
>W1711300675
MAHE01000015
Bacteroidota
Elizabethkingia meningoseptica [MAHE]
456821
456905
+
Leu
GAG
[ENA]
¡û
>W1711300710
MAHF01000010
Bacteroidota
Elizabethkingia meningoseptica [MAHF]
456736
456820
+
Leu
GAG
[ENA]
¡û
>W1711300823
MAHI01000006
Bacteroidota
Elizabethkingia meningoseptica [MAHI]
329778
329694
-
Leu
GAG
[ENA]
¡û
>W1711301573
MAHZ01000016
Bacteroidota
Elizabethkingia meningoseptica [MAHZ]
443114
443198
+
Leu
GAG
[ENA]
¡û
>W1711301612
MAIA01000011
Bacteroidota
Elizabethkingia meningoseptica [MAIA]
116960
116876
-
Leu
GAG
[ENA]
¡û
>W1711344633
MCJH01000005
Bacteroidota
Elizabethkingia meningoseptica [MCJH]
460051
460135
+
Leu
GAG
[ENA]
¡û
>W1711373065
MDTY01000006
Bacteroidota
Elizabethkingia meningoseptica [MDTY]
460051
460135
+
Leu
GAG
[ENA]
¡û
>W1711373107
MDTZ01000008
Bacteroidota
Elizabethkingia meningoseptica [MDTZ]
98802
98718
-
Leu
GAG
[ENA]
¡û
>W1711628512
MPOG01000001
Bacteroidota
Elizabethkingia meningoseptica [MPOG]
452281
452365
+
Leu
GAG
[ENA]
¡û
>C171015081
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
266422
266338
-
Leu
GAG
-
¡û
>C171048238
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
38598
38514
-
Leu
GAG
-
¡û
>C171048337
CP016378
Bacteroidota
Elizabethkingia meningoseptica G4120 [CP016378]
468576
468492
-
Leu
GAG
-
¡û
>W131059199
ANGF01000002
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
85594
85678
+
Leu
GAG
[ENA]
¡û
>W131188340
ASAN01000046
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
16268
16352
+
Leu
GAG
[ENA]
¡û
>W131241076
BARD01000003
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
146894
146978
+
Leu
GAG
[ENA]
¡û
>WENV180007782
FLSB01000001
[FLSB] metagenome; saliva
229147
229231
+
Leu
GAG
[ENA]
¢þ
>WENV180007785
FLSB01000001
[FLSB] metagenome; saliva
229484
229568
+
Leu
GAG
[ENA]
¢þ
>W141007802
AGYA01000037
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
50682
50596
-
Leu
GAG
[ENA]
¡û
>W141007826
AGYB01000007
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
25170
25256
+
Leu
GAG
[ENA]
¡û
>WENV180758908
ODHY01000002
[ODHY] human metagenome; G_DNA_Buccal mucosa
227200
227284
+
Leu
GAG
[ENA]
¢þ
>WENV180865334
ODLI01122605
[ODLI] human metagenome; G_DNA_Buccal mucosa
154
70
-
Leu
GAG
[ENA]
¢þ
>WENV180881096
ODLZ01154757
[ODLZ] human metagenome; G_DNA_Tongue dorsum
154
70
-
Leu
GAG
[ENA]
¢þ
>WENV180936899
ODTV01001010
[ODTV] human metagenome; G_DNA_Buccal mucosa
3389
3473
+
Leu
GAG
[ENA]
¢þ
>WENV180947590
ODUF01052461
[ODUF] human metagenome; G_DNA_Supragingival plaque
154
70
-
Leu
GAG
[ENA]
¢þ
>WENV181025951
ODXB01104237
[ODXB] human metagenome; G_DNA_Buccal mucosa
71
155
+
Leu
GAG
[ENA]
¢þ
>WENV181027951
ODXD01147806
[ODXD] human metagenome; G_DNA_Buccal mucosa
154
70
-
Leu
GAG
[ENA]
¢þ
>C181016522
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
38598
38514
-
Leu
GAG
-
¡û
>C181209486
LS483376
Bacteroidota
Elizabethkingia meningoseptica NCTC10016 [LS483376]
2576554
2576638
+
Leu
GAG
-
¡û
>C181226378
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
531715
531631
-
Leu
GAG
-
¡û
>C191065610
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
770764
770680
-
Leu
GAG
-
¡û
>C191185742
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
576849
576765
-
Leu
GAG
-
¡û
>W1910285404
FRFB01000007
Bacteroidota
Elizabethkingia meningoseptica [FRFB]
104086
104170
+
Leu
GAG
[ENA]
¡û
>W1911615625
PPEC01000001
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
357587
357671
+
Leu
GAG
[ENA]
¡û
>W1911788796
QYCZ01000001
Bacteroidota
Bergeyella cardium 1 [QYCZ]
1495451
1495535
+
Leu
GAG
[ENA]
¡û
>W1810191527
PKKR01000001
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
175077
175161
+
Leu
GAG
[ENA]
¡û
>W1810583121
QEWX01000038
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
832
748
-
Leu
GAG
[ENA]
¡û
>C151010281
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1991231
1991315
+
Leu
GAG
[Ensembl]
¡û
>C151018482
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
517184
517100
-
Leu
GAG
-
¡û
>C151025757
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
518617
518533
-
Leu
GAG
[Ensembl]
¡û
>C151025797
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
531665
531581
-
Leu
GAG
[Ensembl]
¡û
>C11118470
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
530176
530092
-
Leu
GAG
[Ensembl]
¡û
>C11118493
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1777995
1778079
+
Leu
GAG
[Ensembl]
¡û
>W11141067
AENH01000027
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
138007
137923
-
Leu
GAG
[ENA]
¡û
>W1511584113
LAVB01000004
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
50827
50911
+
Leu
GAG
[ENA]
¡û
>C131006678
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1604587
1604671
+
Leu
GAG
[Ensembl]
¡û
>C131011619
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
1199435
1199519
+
Leu
GAG
[Ensembl]
¡û
>W1610507446
FLSV01000006
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
442946
443030
+
Leu
GAG
[ENA]
¡û
>W1610765854
LNOH01000021
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
322821
322737
-
Leu
GAG
[ENA]
¡û
>W1610928920
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
495839
495755
-
Leu
GAG
[ENA]
¡û
>W1610928951
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
291139
291223
+
Leu
GAG
[ENA]
¡û
>W1610928988
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
850353
850269
-
Leu
GAG
[ENA]
¡û
>W1610929025
LUDJ01000002
Bacteroidota
Riemerella anatipestifer [LUDJ]
11445
11529
+
Leu
GAG
[ENA]
¡û
>W1610929065
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
499601
499517
-
Leu
GAG
[ENA]
¡û
>W1610929095
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
121596
121680
+
Leu
GAG
[ENA]
¡û
>W1610929154
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
121474
121558
+
Leu
GAG
[ENA]
¡û
>W1610929190
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
121474
121558
+
Leu
GAG
[ENA]
¡û
>W1610929219
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
321339
321255
-
Leu
GAG
[ENA]
¡û
>W1610929250
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
121573
121657
+
Leu
GAG
[ENA]
¡û
>W1610929291
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
321338
321254
-
Leu
GAG
[ENA]
¡û
>W1610929333
LUDR01000008
Bacteroidota
Riemerella anatipestifer [LUDR]
99673
99589
-
Leu
GAG
[ENA]
¡û
>W1610929363
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
495908
495824
-
Leu
GAG
[ENA]
¡û
>W1610929404
LUDT01000019
Bacteroidota
Riemerella anatipestifer [LUDT]
32959
33043
+
Leu
GAG
[ENA]
¡û
>W1610929435
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
324302
324218
-
Leu
GAG
[ENA]
¡û
>W1610929466
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
177179
177263
+
Leu
GAG
[ENA]
¡û
>W1710499664
FLSV01000006
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
442946
443030
+
Leu
GAG
[ENA]
¡û
>W1710587258
FQYI01000003
Bacteroidota
Cruoricaptor ignavus [FQYI]
128548
128634
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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