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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741595 (27 seq.)
>W1710878769
LMRF01000004
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
41034
41108
+
Gln
CTG
[ENA]
¡û
>W131226715
AUEP01000001
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
468060
468134
+
Gln
CTG
[ENA]
¡û
>WENV180039179
LLBY010033129
[LLBY] soil metagenome; soil from tomato rhizosphere
4499
4427
-
Gln
CTG
[ENA]
¡û
>WENV180304718
OBJI01304171
[OBJI] soil metagenome; soil
118
190
+
Gln
CTG
[ENA]
¡û
>WENV181171819
OEIV010368540
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
235
163
-
Gln
CTG
[ENA]
¡û
>W141775180
JOJN01000001
Actinomycetota
Nocardioides aequoreus [JOJN]
168947
168873
-
Gln
CTG
[ENA]
¡û
>W2010465949
JAAGLV010000014
Actinomycetota
Streptomyces sp. SID13031 [JAAGLV]
216436
216364
-
Gln
CTG
[ENA]
¡û
>W2010667797
JACBZA010000001
Actinomycetota
Actinopolymorpha cephalotaxi DSM 45117 [JACBZA]
1129758
1129830
+
Gln
CTG
[ENA]
¡û
>W2010668155
JACBZH010000001
Actinomycetota
Actinopolymorpha rutila DSM 18448 [JACBZH]
2146682
2146754
+
Gln
CTG
[ENA]
¡û
>W2011408330
RDBE01000001
Actinomycetota
Marmoricola sp. 4Q3S-7 [RDBE]
867088
867160
+
Gln
CTG
[ENA]
¡û
>W2011447739
RKHO01000001
Actinomycetota
Marmoricola aurantiacus DSM 12652 [RKHO]
3132404
3132332
-
Gln
CTG
[ENA]
¡û
>W2011549805
SDPU01000021
Actinomycetota
Nocardioides iriomotensis NBRC 105384 [SDPU]
93469
93541
+
Gln
CTG
[ENA]
¡û
>W2011654077
SOAW01000001
Actinomycetota
Naumannella halotolerans DSM 24323 [SOAW]
806771
806843
+
Gln
CTG
[ENA]
¡û
>W2110029284
BMKQ01000001
Actinomycetota
Marmoricola endophyticus CGMCC 1.16067 [BMKQ]
1142503
1142431
-
Gln
CTG
[ENA]
¡û
>W2110669926
JAIEZQ010000002
Actinomycetota
Nocardioides sp. WL0053 [JAIEZQ]
918467
918539
+
Gln
CTG
[ENA]
¡û
>C211060652
CP043661
Actinomycetota
Kribbella qitaiheensis SPB151 [CP043661]
1459876
1459804
-
Gln
CTG
-
¡û
>C211137473
CP060713
Actinomycetota
Nocardioides mesophilus KACC 16243 [CP060713]
3420294
3420366
+
Gln
CTG
-
¡û
>C211342170
CP076053
Actinomycetota
Nocardioidaceae bacterium TYQ2 [CP076053]
281969
281897
-
Gln
CTG
-
¡û
>C211350157
CP077062
Actinomycetota
Nocardioides sp. G188 [CP077062]
842144
842216
+
Gln
CTG
-
¡û
>W1510060524
CCXJ01000612
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
1782
1708
-
Gln
CTG
[ENA]
¡û
>C231364401
CP095846
Actinomycetota
Nocardioidaceae bacterium SCSIO 66511 [CP095846]
3088377
3088305
-
Gln
CTG
-
¡û
>C231555824
CP114065
Actinomycetota
Kribbella sp. CA-293567 [CP114065]
2587149
2587221
+
Gln
CTG
-
¡û
>C241138162
CP049867
Actinomycetota
Nocardioides sp. HDW12B [CP049867]
2622447
2622375
-
Gln
CTG
-
¡û
>C241204602
CP107954
Actinomycetota
Kribbella sp. NBC_00382 [CP107954]
8139796
8139724
-
Gln
CTG
-
¡û
>C241210330
CP108487
Actinomycetota
Kribbella sp. NBC_01245 [CP108487]
8486412
8486484
+
Gln
CTG
-
¡û
>W1610741115
LMRF01000004
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
41034
41108
+
Gln
CTG
[ENA]
¡û
>W1710561684
FOOI01000019
Actinomycetota
Actinopolymorpha cephalotaxi [FOOI]
95343
95417
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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