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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.743157 (69 seq.)
>W1711047373
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
155229
155155
-
Gln
TTG
[ENA]
¡û
>W1711047375
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
149892
149818
-
Gln
TTG
[ENA]
¡û
>W1711268643
LZDE01000311
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
33926
33852
-
Gln
TTG
[ENA]
¡û
>W1711678541
MRUG01000083
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
52639
52565
-
Gln
TTG
[ENA]
¡û
>C171097793
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1111772
1111698
-
Gln
TTG
-
¡û
>C171097795
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1106557
1106483
-
Gln
TTG
-
¡û
>C171103103
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
887909
887835
-
Gln
TTG
-
¡û
>W131175000
ARIX01000010
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
30352
30278
-
Gln
TTG
[ENA]
¡û
>C020886
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
4154630
4154704
+
Gln
TTG
[Ensembl]
¡û
>WENV170266101
CERE01039799
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
27097
27171
+
Gln
TTG
[ENA]
¡û
>W141425795
JELR01000002
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
196269
196343
+
Gln
TTG
[ENA]
¡û
>W141425797
JELR01000002
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
201673
201747
+
Gln
TTG
[ENA]
¡û
>WENV170647204
JQIA01015955
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
3369
3295
-
Gln
TTG
[ENA]
¡û
>WENV170673693
LAZR01023197
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
2186
2112
-
Gln
TTG
[ENA]
¡û
>W09100553
AABI03000001
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
276893
276967
+
Gln
TTG
[ENA]
¡û
>W1911138225
NOXC01000020
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
25584
25658
+
Gln
TTG
[ENA]
¡û
>W2010168625
CABFPG010000005
Gammaproteobacteria
Teredinibacter sp. ISS155 [CABFPG]
443376
443302
-
Gln
TTG
[ENA]
¡û
>W2010529695
JAAOIX010000010
Gammaproteobacteria
Pseudomaricurvus alcaniphilus MEBiC06469 [JAAOIX]
164019
163945
-
Gln
TTG
[ENA]
¡û
>W2010532571
JAAONY010000001
Gammaproteobacteria
Pseudoteredinibacter isoporae LMG 25246 [JAAONY]
1230108
1230034
-
Gln
TTG
[ENA]
¡û
>W2010532622
JAAONZ010000003
Gammaproteobacteria
Aestuariicella hydrocarbonica JCM 30134 [JAAONZ]
231995
231921
-
Gln
TTG
[ENA]
¡û
>W2010536137
JAAQPI010000003
Gammaproteobacteria
Pseudomaricurvus alkylphenolicus KCTC 32386 [JAAQPI]
557277
557351
+
Gln
TTG
[ENA]
¡û
>W2010536218
JAAQPJ010000024
Gammaproteobacteria
Pseudoteredinibacter isoporae DSM 22368 [JAAQPJ]
807302
807376
+
Gln
TTG
[ENA]
¡û
>W2010702902
JACHHR010000004
Gammaproteobacteria
Microbulbifer hydrolyticus DSM 11525 [JACHHR]
109334
109408
+
Gln
TTG
[ENA]
¡û
>W2010702904
JACHHR010000004
Gammaproteobacteria
Microbulbifer hydrolyticus DSM 11525 [JACHHR]
114536
114610
+
Gln
TTG
[ENA]
¡û
>W2010702965
JACHHT010000001
Gammaproteobacteria
Pseudoteredinibacter isoporae DSM 22368 [JACHHT]
1230076
1230002
-
Gln
TTG
[ENA]
¡û
>W2010743162
JACJUV010000001
Gammaproteobacteria
Teredinibacter franksiae Bsc2 [JACJUV]
3352718
3352644
-
Gln
TTG
[ENA]
¡û
>W2011014467
NOXC01000020
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
25584
25658
+
Gln
TTG
[ENA]
¡û
>W2012034887
VHSG01000005
Gammaproteobacteria
Cellvibrionaceae bacterium R142 [VHSG]
265099
265173
+
Gln
TTG
[ENA]
¡û
>W2012042433
VISH01000001
Gammaproteobacteria
Alteromonadaceae bacterium 2753L.S.0a.02 [VISH]
122145
122219
+
Gln
TTG
[ENA]
¡û
>W2012469054
WVVW01000001
Gammaproteobacteria
Pseudomaricurvus sp. HS19 [WVVW]
1692467
1692541
+
Gln
TTG
[ENA]
¡û
>W2110423337
JAEKJR010000003
Gammaproteobacteria
Microbulbifer salipaludis SN0-2 [JAEKJR]
173329
173403
+
Gln
TTG
[ENA]
¡û
>W2110423339
JAEKJR010000003
Gammaproteobacteria
Microbulbifer salipaludis SN0-2 [JAEKJR]
178528
178602
+
Gln
TTG
[ENA]
¡û
>W2110611623
JAHKPP010000023
Gammaproteobacteria
Saccharophagus degradans E3M17 [JAHKPP]
76744
76670
-
Gln
TTG
[ENA]
¡û
>W2110611667
JAHKPQ010000074
Gammaproteobacteria
Gilvimarinus agarilyticus E3M09 [JAHKPQ]
8595
8521
-
Gln
TTG
[ENA]
¡û
>W2110613805
JAHKRS010000007
Gammaproteobacteria
Aestuariicella sp. G3-2 [JAHKRS]
198711
198637
-
Gln
TTG
[ENA]
¡û
>W2110655065
JAHVKG010000001
Gammaproteobacteria
Microbulbifer agarilyticus DP3N7-3 [JAHVKG]
786806
786732
-
Gln
TTG
[ENA]
¡û
>W2110655067
JAHVKG010000001
Gammaproteobacteria
Microbulbifer agarilyticus DP3N7-3 [JAHVKG]
781609
781535
-
Gln
TTG
[ENA]
¡û
>W2110655600
JAHVKO010000003
Gammaproteobacteria
Microbulbifer agarilyticus DP4N21-6 [JAHVKO]
814246
814172
-
Gln
TTG
[ENA]
¡û
>W2110655602
JAHVKO010000003
Gammaproteobacteria
Microbulbifer agarilyticus DP4N21-6 [JAHVKO]
809036
808962
-
Gln
TTG
[ENA]
¡û
>C201202243
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
1182834
1182760
-
Gln
TTG
-
¡û
>C201202245
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
1177632
1177558
-
Gln
TTG
-
¡û
>W2110700746
JAIUZG010000002
Gammaproteobacteria
Microbulbifer agarilyticus DP5N0-1 [JAIUZG]
672081
672007
-
Gln
TTG
[ENA]
¡û
>W2110700748
JAIUZG010000002
Gammaproteobacteria
Microbulbifer agarilyticus DP5N0-1 [JAIUZG]
666912
666838
-
Gln
TTG
[ENA]
¡û
>W2110701016
JAIUZM010000001
Gammaproteobacteria
Microbulbifer agarilyticus DP3N0-2 [JAIUZM]
256075
256149
+
Gln
TTG
[ENA]
¡û
>W2110701018
JAIUZM010000001
Gammaproteobacteria
Microbulbifer agarilyticus DP3N0-2 [JAIUZM]
261271
261345
+
Gln
TTG
[ENA]
¡û
>C211128758
CP060084
Gammaproteobacteria
Teredinibacter haidensis Bs08 [CP060084]
3334298
3334372
+
Gln
TTG
-
¡û
>C211129097
CP060092
Gammaproteobacteria
Teredinibacter purpureus Bs12 [CP060092]
1444660
1444586
-
Gln
TTG
-
¡û
>W2110703449
JAIVKJ010000005
Gammaproteobacteria
Microbulbifer elongatus SaN0-4 [JAIVKJ]
171315
171241
-
Gln
TTG
[ENA]
¡û
>W2110703451
JAIVKJ010000005
Gammaproteobacteria
Microbulbifer elongatus SaN0-4 [JAIVKJ]
165937
165863
-
Gln
TTG
[ENA]
¡û
>W2110740279
JDFX01000021
Gammaproteobacteria
Alteromonadaceae bacterium Bs31 [JDFX]
67321
67395
+
Gln
TTG
[ENA]
¡û
>C231245023
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
660508
660434
-
Gln
TTG
-
¡û
>C231245025
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
655141
655067
-
Gln
TTG
-
¡û
>C231254163
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
3709184
3709258
+
Gln
TTG
-
¡û
>C231254165
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
3714387
3714461
+
Gln
TTG
-
¡û
>C231425866
CP100350
Gammaproteobacteria
Gilvimarinus sp. DA14 [CP100350]
1304978
1305052
+
Gln
TTG
-
¡û
>C241121048
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
4016241
4016315
+
Gln
TTG
-
¡û
>C241121050
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
4021429
4021503
+
Gln
TTG
-
¡û
>C241170971
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
2697967
2697893
-
Gln
TTG
-
¡û
>C241170973
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
2692744
2692670
-
Gln
TTG
-
¡û
>C241234535
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
4156594
4156520
-
Gln
TTG
-
¡û
>C241234537
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
4151440
4151366
-
Gln
TTG
-
¡û
>C241249932
CP123764
Gammaproteobacteria
Saccharophagus degradans FZY0027 [CP123764]
1034742
1034668
-
Gln
TTG
-
¡û
>W2310026137
BSPD01000030
Gammaproteobacteria
Marinibactrum halimedae NBRC 110095 [BSPD]
115536
115610
+
Gln
TTG
[ENA]
¡û
>W1510865176
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
1450151
1450077
-
Gln
TTG
[ENA]
¡û
>W1511573583
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
1138688
1138762
+
Gln
TTG
[ENA]
¡û
>W11170315
AFPJ01000030
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
74467
74541
+
Gln
TTG
[ENA]
¡û
>W1610888502
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
155229
155155
-
Gln
TTG
[ENA]
¡û
>W1610888504
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
149892
149818
-
Gln
TTG
[ENA]
¡û
>W1710607821
FXAI01000010
Gammaproteobacteria
Alteromonadaceae bacterium Bs31 [FXAI]
68601
68675
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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