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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.743445 (41 seq.)
>W1711075315
LSKH01000244
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
25534
25608
+
Asn
GTT
[ENA]
¡û
>W1711501459
MKRR01000098
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
147162
147236
+
Asn
GTT
[ENA]
¡û
>W1711506359
MKWI01000016
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
456136
456062
-
Asn
GTT
[ENA]
¡û
>WENV180019686
FTCH01000130
[FTCH] metagenome; soil
6
80
+
Asn
GTT
[ENA]
¡û
>WENV180027840
FTIZ01153248
[FTIZ] metagenome; soil
321
395
+
Asn
GTT
[ENA]
¡û
>WENV180031923
FTJU01001458
[FTJU] metagenome; soil
6323
6397
+
Asn
GTT
[ENA]
¡û
>WENV180298131
OBJA01183525
[OBJA] soil metagenome; sediment, water from around vicinity
381
307
-
Asn
GTT
[ENA]
¡û
>WENV181163901
OEIQ01331578
[OEIQ] soil metagenome; soil
105
31
-
Asn
GTT
[ENA]
¡û
>WENV181164811
OEIR01381412
[OEIR] soil metagenome; soil
110
36
-
Asn
GTT
[ENA]
¡û
>WENV181221884
OFCZ01001335
[OFCZ] metagenome; soil
349
275
-
Asn
GTT
[ENA]
¡û
>WENV181402281
OFTY01000416
[OFTY] sludge metagenome; sludge
28261
28187
-
Asn
GTT
[ENA]
¡û
>WENV183727941
PJTP01008431
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
274
200
-
Asn
GTT
[ENA]
¡û
>WENV183729579
PJTQ01075658
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
75
149
+
Asn
GTT
[ENA]
¡û
>WENV170011397
APMI01063013
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
872
798
-
Asn
GTT
[ENA]
¡û
>WENV170308836
CESL01065328
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1185
1111
-
Asn
GTT
[ENA]
¡û
>WENV170337593
CETA01134695
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
461
387
-
Asn
GTT
[ENA]
¡û
>W141452314
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1806651
1806725
+
Asn
GTT
[ENA]
¡û
>W2010669828
JACCAP010000001
Alphaproteobacteria
Sphingomonas sp. R1S6C [JACCAP]
1311801
1311875
+
Asn
GTT
[ENA]
¡û
>W2010669973
JACCAR010000001
Alphaproteobacteria
Sphingomonas sp. R3G8D [JACCAR]
1244051
1243977
-
Asn
GTT
[ENA]
¡û
>W2010706141
JACHJZ010000001
Alphaproteobacteria
Sphingobium sp. B12D2A [JACHJZ]
918968
918894
-
Asn
GTT
[ENA]
¡û
>W2010706161
JACHKA010000001
Alphaproteobacteria
Sphingobium sp. B1D3A [JACHKA]
2050257
2050331
+
Asn
GTT
[ENA]
¡û
>W2010706234
JACHKB010000001
Alphaproteobacteria
Sphingobium sp. B1D3B [JACHKB]
1987169
1987095
-
Asn
GTT
[ENA]
¡û
>W2010706292
JACHKC010000001
Alphaproteobacteria
Sphingobium sp. B1D3D [JACHKC]
219869
219795
-
Asn
GTT
[ENA]
¡û
>W2010709055
JACHLW010000001
Alphaproteobacteria
Sphingomonas sp. R1S3D [JACHLW]
178185
178111
-
Asn
GTT
[ENA]
¡û
>W2010719158
JACHZH010000008
Alphaproteobacteria
Sphingomonas sp. BK069 [JACHZH]
77608
77534
-
Asn
GTT
[ENA]
¡û
>W2010719951
JACHZX010000005
Alphaproteobacteria
Sphingomonas sp. BK345 [JACHZX]
317241
317167
-
Asn
GTT
[ENA]
¡û
>W2010721305
JACIAY010000004
Alphaproteobacteria
Sphingomonas sp. BK580 [JACIAY]
324757
324683
-
Asn
GTT
[ENA]
¡û
>W2011490359
RSEK01000002
Alphaproteobacteria
Altererythrobacter xinjiangensis CCTCC AB 207166 [RSEK]
314630
314556
-
Asn
GTT
[ENA]
¡û
>W2011623243
SLXN01000001
Alphaproteobacteria
Sphingomonas sp. BK235 [SLXN]
840049
839975
-
Asn
GTT
[ENA]
¡û
>W2110406067
JAEDAI010000001
Alphaproteobacteria
Novosphingopyxis sp. YJ-S2-01 [JAEDAI]
1899283
1899357
+
Asn
GTT
[ENA]
¡û
>W2110425622
JAELTW010000017
Alphaproteobacteria
Sphingomonas sp. ASV18 [JAELTW]
19490
19416
-
Asn
GTT
[ENA]
¡û
>W2110663336
JAHXZL010000004
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
69086
69160
+
Asn
GTT
[ENA]
¡û
>W2110663435
JAHXZN010000002
Alphaproteobacteria
Sphingomonas sp. RRHST34 [JAHXZN]
82214
82288
+
Asn
GTT
[ENA]
¡û
>W2110690842
JAIOKB010000007
Alphaproteobacteria
Sphingomonas yunnanensis YIM 3 [JAIOKB]
61940
62014
+
Asn
GTT
[ENA]
¡û
>C211134435
CP060495
Alphaproteobacteria
Novosphingopyxis sp. PB63 pb63 [CP060495]
619999
620073
+
Asn
GTT
-
¡û
>C231269246
CP090059
Alphaproteobacteria
Sphingomonas cannabina DM2-R-LB4 [CP090059]
2225657
2225583
-
Asn
GTT
-
¡û
>C241058998
CP041659
Alphaproteobacteria
Sphingomonas xanthus AE3 [CP041659]
294821
294895
+
Asn
GTT
-
¡û
>C241141790
CP050137
Alphaproteobacteria
Sphingomonas sp. CL5.1 [CP050137]
3037066
3036992
-
Asn
GTT
-
¡û
>C11121263
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6 [AP012222]
2235959
2236033
+
Asn
GTT
[Ensembl]
¡û
>W1610914620
LSKH01000244
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
25534
25608
+
Asn
GTT
[ENA]
¡û
>W1710542320
FNZB01000001
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
1562854
1562780
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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