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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.743475 (45 seq.)
>W1710786260
LJIV01000001
Bacillota
Leuconostoc lactis [LJIV]
19467
19394
-
Asn
GTT
[ENA]
¡û
>W1711627417
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
24729
24656
-
Asn
GTT
[ENA]
¡û
>W1711627509
MPLN01000007
Bacillota
Leuconostoc lactis [MPLN]
24729
24656
-
Asn
GTT
[ENA]
¡û
>W1711999786
NDXG01000012
Bacillota
Leuconostoc citreum [NDXG]
66771
66844
+
Asn
GTT
[ENA]
¡û
>C08005989
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1753490
1753563
+
Asn
GTT
[Ensembl]
¡û
>WENV170016623
AZMM01018623
[AZMM] human gut metagenome; premature infant gut
746
673
-
Asn
GTT
[ENA]
¡û
>W1910821969
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
889897
889970
+
Asn
GTT
[ENA]
¡û
>W1911283610
NTJC01000007
Bacillota
Leuconostoc citreum TR116 [NTJC]
17486
17413
-
Asn
GTT
[ENA]
¡û
>W1911631647
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
66757
66830
+
Asn
GTT
[ENA]
¡û
>W2010092902
BJJW01000015
Bacillota
Leuconostoc citreum F192-5 [BJJW]
72720
72793
+
Asn
GTT
[ENA]
¡û
>W2010092952
BJJX01000004
Bacillota
Leuconostoc citreum NRIC 1776 [BJJX]
66574
66647
+
Asn
GTT
[ENA]
¡û
>W2010099610
BJUO01000009
Bacillota
Leuconostoc citreum NBRC 102476 [BJUO]
61773
61846
+
Asn
GTT
[ENA]
¡û
>W2010678064
JACDIP010000026
Bacillota
Leuconostoc citreum BD1707 [JACDIP]
44516
44589
+
Asn
GTT
[ENA]
¡û
>W2010688403
JACGMK010000010
Bacillota
Leuconostoc citreum SG255 [JACGMK]
17489
17416
-
Asn
GTT
[ENA]
¡û
>W2010918302
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
889897
889970
+
Asn
GTT
[ENA]
¡û
>W2011074670
NTJC01000007
Bacillota
Leuconostoc citreum TR116 [NTJC]
17486
17413
-
Asn
GTT
[ENA]
¡û
>W2011183260
PDDF01000004
Bacillota
Leuconostoc citreum TMW21194 [PDDF]
66523
66596
+
Asn
GTT
[ENA]
¡û
>W2011222662
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
66757
66830
+
Asn
GTT
[ENA]
¡û
>W2011241147
QFDE01000004
Bacillota
Leuconostoc citreum G4 [QFDE]
17488
17415
-
Asn
GTT
[ENA]
¡û
>W2011241374
QFDI01000007
Bacillota
Leuconostoc citreum TR153 [QFDI]
17486
17413
-
Asn
GTT
[ENA]
¡û
>W2110070750
BPKV01000009
Bacillota
Leuconostoc holzapfelii JCM 16942 [BPKV]
62865
62938
+
Asn
GTT
[ENA]
¡û
>W2110070892
BPKY01000008
Bacillota
Leuconostoc miyukkimchii JCM 17445 [BPKY]
44963
44890
-
Asn
GTT
[ENA]
¡û
>W2110070938
BPKZ01000015
Bacillota
Leuconostoc palmae JCM 16944 [BPKZ]
348
421
+
Asn
GTT
[ENA]
¡û
>W2110299962
JADAXK010000010
Bacillota
Leuconostoc citreum DmW_137 [JADAXK]
17458
17385
-
Asn
GTT
[ENA]
¡û
>W2110351653
JADNGQ010000006
Bacillota
Leuconostoc lactis 1001095IJ_161003_G5 [JADNGQ]
56879
56952
+
Asn
GTT
[ENA]
¡û
>W2110581335
JAGYGO010000005
Bacillota
Leuconostoc citreum 3.8.12 [JAGYGO]
72711
72784
+
Asn
GTT
[ENA]
¡û
>C211050737
CP039736
Bacillota
Leuconostoc sp. LN180020 [CP039736]
630291
630218
-
Asn
GTT
-
¡û
>C211180886
CP063830
Bacillota
Leuconostoc citreum 37 [CP063830]
1903146
1903219
+
Asn
GTT
-
¡û
>W1510046233
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
96903
96976
+
Asn
GTT
[ENA]
¡û
>W1510046295
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
172783
172856
+
Asn
GTT
[ENA]
¡û
>C231469212
CP103386
Bacillota
Leuconostoc citreum PL105 [CP103386]
1758855
1758928
+
Asn
GTT
-
¡û
>C241065429
CP042393
Bacillota
Leuconostoc citreum CBA3623 [CP042393]
1546902
1546975
+
Asn
GTT
-
¡û
>C241065591
CP042410
Bacillota
Leuconostoc citreum CBA3621 [CP042410]
1752296
1752223
-
Asn
GTT
-
¡û
>C241065666
CP042413
Bacillota
Leuconostoc citreum CBA3624 [CP042413]
398656
398583
-
Asn
GTT
-
¡û
>C241065731
CP042418
Bacillota
Leuconostoc citreum CBA3627 [CP042418]
657289
657216
-
Asn
GTT
-
¡û
>C241065752
CP042420
Bacillota
Leuconostoc lactis CBA3622 [CP042420]
511233
511306
+
Asn
GTT
-
¡û
>C241228856
CP116456
Bacillota
Leuconostoc lactis DMLL10 [CP116456]
1649053
1649126
+
Asn
GTT
-
¡û
>C241310017
CP133560
Bacillota
Leuconostoc citreum SH12 [CP133560]
1767793
1767866
+
Asn
GTT
-
¡û
>W1511468957
JVUU01000022
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
17759
17686
-
Asn
GTT
[ENA]
¡û
>W11137119
AEGQ01000045
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
23266
23339
+
Asn
GTT
[ENA]
¡û
>W11184748
BACM01002086
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
8271
8198
-
Asn
GTT
[ENA]
¡û
>W121127452
CAGE01000012
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
66545
66618
+
Asn
GTT
[ENA]
¡û
>W121127495
CAGF01000009
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
72711
72784
+
Asn
GTT
[ENA]
¡û
>W121127551
CAGG01000018
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
9249
9322
+
Asn
GTT
[ENA]
¡û
>W1610650115
LJIV01000001
Bacillota
Leuconostoc lactis [LJIV]
19467
19394
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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