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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.743698 (52 seq.)
>W1710908958
LNQB01000072
Alphaproteobacteria
Sinorhizobium saheli [LNQB]
11441
11515
+
Asn
GTT
[ENA]
¡û
>W131160096
AQWH01000018
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
91812
91738
-
Asn
GTT
[ENA]
¡û
>W1711353312
MDDW01000005
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
282775
282849
+
Asn
GTT
[ENA]
¡û
>C171105016
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3239143
3239217
+
Asn
GTT
-
¡û
>W141180671
AYGY02000104
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
21384
21310
-
Asn
GTT
[ENA]
¡û
>WENV170500141
CEVT01367506
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
751
825
+
Asn
GTT
[ENA]
¡û
>WENV170790302
MDSV01064107
[MDSV] marine metagenome; seawater
11428
11502
+
Asn
GTT
[ENA]
¡û
>WENV170822304
MDSY01037852
[MDSY] marine metagenome; seawater
4178
4252
+
Asn
GTT
[ENA]
¡û
>WENV170856101
MDTA01217650
[MDTA] marine metagenome; seawater
3651
3725
+
Asn
GTT
[ENA]
¡û
>WENV170896312
MDTD01093717
[MDTD] marine metagenome; seawater
3082
3008
-
Asn
GTT
[ENA]
¡û
>WENV170902448
MDTD01185305
[MDTD] marine metagenome; seawater
2785
2711
-
Asn
GTT
[ENA]
¡û
>WENV170920915
MDTG01005409
[MDTG] marine metagenome; seawater
5290
5216
-
Asn
GTT
[ENA]
¡û
>C181051595
CP021371
Alphaproteobacteria
Rhizobium sp. ACO-34A [CP021371]
2066894
2066820
-
Asn
GTT
-
¡û
>W1810365571
PVUG01000005
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
135770
135844
+
Asn
GTT
[ENA]
¡û
>C151072546
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3360580
3360506
-
Asn
GTT
[Ensembl]
¡û
>W2010493771
JAAKZH010000003
Alphaproteobacteria
Rhizobium daejeonense CCBAU10050 [JAAKZH]
432119
432193
+
Asn
GTT
[ENA]
¡û
>W2010570134
JAATVV010000004
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
75465
75539
+
Asn
GTT
[ENA]
¡û
>W2010636386
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
734007
734081
+
Asn
GTT
[ENA]
¡û
>W2010725019
JACIDU010000007
Alphaproteobacteria
Rhizobium borbori DSM 26385 [JACIDU]
149337
149263
-
Asn
GTT
[ENA]
¡û
>W2010725253
JACIDZ010000004
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
186637
186563
-
Asn
GTT
[ENA]
¡û
>W2011627776
SMAR01000021
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
9742
9816
+
Asn
GTT
[ENA]
¡û
>W2011753787
SZVV01000001
Alphaproteobacteria
Rhizobiaceae bacterium LC148 [SZVV]
22870
22944
+
Asn
GTT
[ENA]
¡û
>W2011766798
UBJQ01000020
Alphaproteobacteria
Rhizobiales bacterium [UBJQ]
56037
56111
+
Asn
GTT
[ENA]
¡û
>W2011767816
UBKR01000026
Alphaproteobacteria
Rhizobiales bacterium [UBKR]
205061
205135
+
Asn
GTT
[ENA]
¡û
>W2011768965
UBLV01000011
Alphaproteobacteria
Rhizobiales bacterium [UBLV]
206435
206509
+
Asn
GTT
[ENA]
¡û
>W2011769635
UBMM01000009
Alphaproteobacteria
Rhizobiales bacterium [UBMM]
222275
222349
+
Asn
GTT
[ENA]
¡û
>W2011772674
UBPG01000021
Alphaproteobacteria
Rhizobiales bacterium [UBPG]
105
31
-
Asn
GTT
[ENA]
¡û
>W2011772857
UBPL01000010
Alphaproteobacteria
Rhizobiales bacterium [UBPL]
70694
70620
-
Asn
GTT
[ENA]
¡û
>W2011775727
UBRZ01000010
Alphaproteobacteria
Rhizobiales bacterium [UBRZ]
216123
216197
+
Asn
GTT
[ENA]
¡û
>W2011782059
UBXP01000038
Alphaproteobacteria
Rhizobiales bacterium [UBXP]
105
31
-
Asn
GTT
[ENA]
¡û
>W2011783117
UBYN01000007
Alphaproteobacteria
Rhizobiales bacterium [UBYN]
285825
285899
+
Asn
GTT
[ENA]
¡û
>W2011788225
UCDB01000010
Alphaproteobacteria
Rhizobiales bacterium [UCDB]
40350
40276
-
Asn
GTT
[ENA]
¡û
>W2011788605
UCDK01000002
Alphaproteobacteria
Rhizobiales bacterium [UCDK]
324682
324756
+
Asn
GTT
[ENA]
¡û
>W2011788890
UCDQ01000012
Alphaproteobacteria
Rhizobiales bacterium [UCDQ]
86624
86550
-
Asn
GTT
[ENA]
¡û
>W2011790130
UCES01000002
Alphaproteobacteria
Rhizobiales bacterium [UCES]
206435
206509
+
Asn
GTT
[ENA]
¡û
>W2011791122
UCFN01000006
Alphaproteobacteria
Rhizobiales bacterium [UCFN]
221847
221921
+
Asn
GTT
[ENA]
¡û
>W2011791406
UCFT01000043
Alphaproteobacteria
Rhizobiales bacterium [UCFT]
30250
30324
+
Asn
GTT
[ENA]
¡û
>W2011792016
UCGH01000005
Alphaproteobacteria
Rhizobiales bacterium [UCGH]
339865
339939
+
Asn
GTT
[ENA]
¡û
>W2011793119
UCHG01000012
Alphaproteobacteria
Rhizobiales bacterium [UCHG]
70679
70605
-
Asn
GTT
[ENA]
¡û
>W2011796437
UCKD01000018
Alphaproteobacteria
Rhizobiales bacterium [UCKD]
105
31
-
Asn
GTT
[ENA]
¡û
>W2011797370
UCKY01000011
Alphaproteobacteria
Rhizobiales bacterium [UCKY]
70715
70641
-
Asn
GTT
[ENA]
¡û
>W2011802356
UEHK01000005
Alphaproteobacteria
Rhizobiales bacterium [UEHK]
141324
141398
+
Asn
GTT
[ENA]
¡û
>W2011976161
VCLB01000009
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
173428
173502
+
Asn
GTT
[ENA]
¡û
>W2012031637
VHLG01000001
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
462111
462185
+
Asn
GTT
[ENA]
¡û
>W2012340965
WITB01000044
Alphaproteobacteria
Sinorhizobium saheli USDA4893 [WITB]
87147
87073
-
Asn
GTT
[ENA]
¡û
>W2110234684
JACLAL010000005
Alphaproteobacteria
Rhizobium daejeonense L61 [JACLAL]
91784
91710
-
Asn
GTT
[ENA]
¡û
>W2110538047
JAGGJU010000003
Alphaproteobacteria
Rhizobium halophytocola DSM 21600 [JAGGJU]
162791
162717
-
Asn
GTT
[ENA]
¡û
>C211232420
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2420372
2420446
+
Asn
GTT
-
¡û
>C241129163
CP048427
Alphaproteobacteria
Rhizobium daejeonense KACC 13094 [CP048427]
3898607
3898533
-
Asn
GTT
-
¡û
>W1511591777
LBHV01000005
Alphaproteobacteria
Rhizobium sp. LC145 [LBHV]
45501
45575
+
Asn
GTT
[ENA]
¡û
>C161070393
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1703009
1702935
-
Asn
GTT
[Ensembl]
¡û
>W1610767317
LNQB01000072
Alphaproteobacteria
Sinorhizobium saheli [LNQB]
11441
11515
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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