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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.744570 (32 seq.)
>W1710815700
LKKM01000024
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
146377
146451
+
Thr
GGT
[ENA]
¡û
>W1710938693
LONF02000004
Gammaproteobacteria
Stutzerimonas balearica [LONF]
358637
358711
+
Thr
GGT
[ENA]
¡û
>W141042070
AMCZ02000079
Gammaproteobacteria
Stutzerimonas stutzeri KOS6 [AMCZ]
2623
2549
-
Thr
GGT
[ENA]
¡û
>W141054689
AOFQ01000026
Gammaproteobacteria
Stutzerimonas chloritidismutans AW-1 [AOFQ]
7233
7307
+
Thr
GGT
[ENA]
¡û
>WENV183746523
POYD01051013
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
184
110
-
Thr
GGT
[ENA]
¡û
>WENV170015306
AZIG01002241
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
256
330
+
Thr
GGT
[ENA]
¡û
>WENV170221237
CEQA01032516
[CEQA] marine metagenome genome assembly TARA_041_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
100
174
+
Thr
GGT
[ENA]
¡û
>WENV170657815
JTFP01022547
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
504
578
+
Thr
GGT
[ENA]
¡û
>WENV170779402
LZQO01000003
[LZQO] oil field metagenome; sample BH-FW-10 from oil reservoir
51177
51103
-
Thr
GGT
[ENA]
¡û
>WENV170779661
LZQQ01001128
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
1341
1415
+
Thr
GGT
[ENA]
¡û
>W2010518374
JAAMQZ010000037
Gammaproteobacteria
Pseudomonas stutzeri 95A6 [JAAMQZ]
7640
7714
+
Thr
GGT
[ENA]
¡û
>W2010673093
JACCCX010000001
Gammaproteobacteria
Pseudomonas oleovorans ZKA50 [JACCCX]
844520
844446
-
Thr
GGT
[ENA]
¡û
>W2011425408
RHQP01000001
Gammaproteobacteria
Pseudomonas sp. o96-267 297 [RHQP]
178150
178224
+
Thr
GGT
[ENA]
¡û
>W2011425795
RHQW01000001
Gammaproteobacteria
Pseudomonas stutzeri PS_376 [RHQW]
806151
806225
+
Thr
GGT
[ENA]
¡û
>W2011425956
RHQZ01000001
Gammaproteobacteria
Pseudomonas stutzeri PS_234 [RHQZ]
388511
388585
+
Thr
GGT
[ENA]
¡û
>W2011426068
RHRB01000001
Gammaproteobacteria
Pseudomonas stutzeri PS_197 [RHRB]
74718
74644
-
Thr
GGT
[ENA]
¡û
>W2011692373
SSTC01000031
Gammaproteobacteria
Pseudomonas sp. A-1 [SSTC]
6460
6386
-
Thr
GGT
[ENA]
¡û
>W2110260295
JACSQG010000011
Gammaproteobacteria
Pseudomonadaceae bacterium Sa2CUA2 [JACSQG]
31713
31787
+
Thr
GGT
[ENA]
¡û
>C211234579
CP067013
Gammaproteobacteria
Pseudomonas balearica FDAARGOS_1013 [CP067013]
3206681
3206755
+
Thr
GGT
-
¡û
>C211248626
CP068551
Gammaproteobacteria
Pseudomonas khazarica ODT-83 [CP068551]
677585
677511
-
Thr
GGT
-
¡û
>W2110761878
QXMO01000003
Gammaproteobacteria
Pseudomonas balearica Z8 [QXMO]
144798
144724
-
Thr
GGT
[ENA]
¡û
>C231527567
CP110110
Gammaproteobacteria
Stutzerimonas balearica Z8 [CP110110]
3914521
3914447
-
Thr
GGT
-
¡û
>C231548076
CP113257
Gammaproteobacteria
Stutzerimonas frequens TF18 [CP113257]
4440389
4440315
-
Thr
GGT
-
¡û
>W2110781711
WIFO01000001
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.495.96 [WIFO]
98490
98564
+
Thr
GGT
[ENA]
¡û
>C241326257
CP136010
Gammaproteobacteria
Pseudomonas sp. FeN3W [CP136010]
3422107
3422181
+
Thr
GGT
-
¡û
>C11118099
CP002622
Gammaproteobacteria
Stutzerimonas stutzeri DSM 4166 [CP002622]
4198643
4198569
-
Thr
GGT
[Ensembl]
¡û
>W1511403788
JTLK01000362
Gammaproteobacteria
Pseudomonas mendocina ZWU0006 [JTLK]
12370
12296
-
Thr
GGT
[ENA]
¡û
>W1511471508
JVYC01000016
Gammaproteobacteria
Stutzerimonas stutzeri 1223_PMEN [JVYC]
74355
74281
-
Thr
GGT
[ENA]
¡û
>C121014947
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
513779
513853
+
Thr
GGT
[Ensembl]
¡û
>W121103082
AKYE01000167
Gammaproteobacteria
Stutzerimonas stutzeri XLDN-R [AKYE]
153529
153455
-
Thr
GGT
[ENA]
¡û
>W1610679797
LKKM01000024
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
146377
146451
+
Thr
GGT
[ENA]
¡û
>W1610794841
LONF01000040
Gammaproteobacteria
Stutzerimonas balearica [LONF]
140509
140583
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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