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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.745054 (48 seq.)
>W131167749
ARDN01000001
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
1005603
1005677
+
Arg
CCT
[ENA]
¡û
>WENV181168800
OEIU01797610
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
118
44
-
Arg
CCT
[ENA]
¡û
>WENV181170028
OEIV010020270
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
334
406
+
Arg
CCT
[ENA]
¡û
>WENV181188245
OEOE01056486
[OEOE] activated sludge metagenome; Activated Sludge
219
145
-
Arg
CCT
[ENA]
¡û
>WENV181226838
OFDN01000152
[OFDN] hot springs metagenome; Water
13967
14039
+
Arg
CCT
[ENA]
¡û
>WENV181836795
OGVJ01030361
[OGVJ] freshwater metagenome; freshwater
380
308
-
Arg
CCT
[ENA]
¡û
>WENV181839527
OGVO01002603
[OGVO] freshwater metagenome; freshwater
1469
1541
+
Arg
CCT
[ENA]
¡û
>WENV181842476
OGVT01002639
[OGVT] freshwater metagenome; freshwater
1631
1703
+
Arg
CCT
[ENA]
¡û
>WENV181848254
OGVZ01003793
[OGVZ] freshwater metagenome; freshwater
2296
2370
+
Arg
CCT
[ENA]
¡û
>WENV170009271
APMI01000018
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
824038
824112
+
Arg
CCT
[ENA]
¡û
>WENV170009608
APMI01000876
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
87730
87806
+
Arg
CCT
[ENA]
¡û
>WENV170216223
CEPX01194327
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2875
2803
-
Arg
CCT
[ENA]
¡û
>WENV170680975
LFEF01039598
[LFEF] freshwater metagenome; waterbloom
1898350
1898424
+
Arg
CCT
[ENA]
¡û
>WENV170980814
MWVT01001977
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
896
970
+
Arg
CCT
[ENA]
¡û
>WENV170982571
MWVU01147261
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
150
225
+
Arg
CCT
[ENA]
¡û
>WENV170983260
MWVV01015968
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1622
1696
+
Arg
CCT
[ENA]
¡û
>WENV170986551
MWVX01050904
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
154
79
-
Arg
CCT
[ENA]
¡û
>WENV170987521
MWVX01209144
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
475
549
+
Arg
CCT
[ENA]
¡û
>WENV170987536
MWVX01211538
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
392
466
+
Arg
CCT
[ENA]
¡û
>WENV170989298
MWVZ01010519
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
201
127
-
Arg
CCT
[ENA]
¡û
>WENV170991596
MWWA01254132
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
191
117
-
Arg
CCT
[ENA]
¡û
>WENV170992104
MWWB01001451
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
5361
5287
-
Arg
CCT
[ENA]
¡û
>WENV170992612
MWWB01054937
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
511
586
+
Arg
CCT
[ENA]
¡û
>WENV170994659
MWWE01024534
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
801
876
+
Arg
CCT
[ENA]
¡û
>WENV170995128
MWWE01171295
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
207
281
+
Arg
CCT
[ENA]
¡û
>WENV170995359
MWWF01002081
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1584
1656
+
Arg
CCT
[ENA]
¡û
>WENV170995391
MWWF01003731
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1487
1415
-
Arg
CCT
[ENA]
¡û
>WENV170995472
MWWF01011483
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
109
35
-
Arg
CCT
[ENA]
¡û
>WENV170996157
MWWF01161886
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
367
441
+
Arg
CCT
[ENA]
¡û
>WENV170996904
MWWG01003897
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
1638
1564
-
Arg
CCT
[ENA]
¡û
>WENV170999253
MWWK01011285
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
137
62
-
Arg
CCT
[ENA]
¡û
>WENV170999497
MWWK01072478
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
227
153
-
Arg
CCT
[ENA]
¡û
>C181187340
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3364434
3364506
+
Arg
CCT
-
¡û
>C191175183
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
1511879
1511951
+
Arg
CCT
-
¡û
>C191189158
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
1553092
1553164
+
Arg
CCT
-
¡û
>W2011544614
SDHW01000004
Bacteroidota
Lacibacter sp. TTM-7 [SDHW]
328837
328765
-
Arg
CCT
[ENA]
¡û
>W2011648075
SNWP01000011
Bacteroidota
Sediminibacterium goheungense DSM 28323 [SNWP]
304635
304563
-
Arg
CCT
[ENA]
¡û
>W2012329660
WHPF01000005
Bacteroidota
Panacibacter sp. KCS-6 [WHPF]
121047
121119
+
Arg
CCT
[ENA]
¡û
>W2110027068
BMIU01000010
Bacteroidota
Echinicola rosea CGMCC 1.15407 [BMIU]
157724
157652
-
Arg
CCT
[ENA]
¡û
>W2110047011
BMWX01000002
Bacteroidota
Echinicola pacifica KCTC 12368 [BMWX]
59979
59907
-
Arg
CCT
[ENA]
¡û
>W2110289891
JACYTQ010000002
Bacteroidota
Echinicola arenosa CAU 1574 [JACYTQ]
736938
736866
-
Arg
CCT
[ENA]
¡û
>W2110597258
JAHEAI010000001
Bacteroidota
Flavihumibacter sp. IMCC34837 [JAHEAI]
3164601
3164529
-
Arg
CCT
[ENA]
¡û
>W2110694346
JAIQXE010000003
Bacteroidota
Flavihumibacter profundi KCTC 62290 [JAIQXE]
412585
412513
-
Arg
CCT
[ENA]
¡û
>C211015022
AP024154
Bacteroidota
Echinicola sp. 20G [AP024154]
1038318
1038246
-
Arg
CCT
-
¡û
>W2110748382
MBUA01000023
Bacteroidota
Flavihumibacter stibioxidans YS-17 [MBUA]
196904
196832
-
Arg
CCT
[ENA]
¡û
>C231314637
CP092333
Bacteroidota
Flavihumibacter fluminis (ex Park et al. 2022) IMCC34837 [CP092333]
3376845
3376773
-
Arg
CCT
-
¡û
>W1511300709
JPHF01000003
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
554181
554253
+
Arg
CCT
[ENA]
¡û
>C131003290
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
1551396
1551468
+
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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