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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74574 (12 seq.)
>C171057468
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
748285
748197
-
Ser
CGA
-
¡û
>W131169172
AREO01000001
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
721525
721613
+
Ser
CGA
[ENA]
¡û
>WENV170689105
LFRM01277249
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
288
376
+
Ser
CGA
[ENA]
¢þ
>WENV170717029
LSQX01021348
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5464
5376
-
Ser
CGA
[ENA]
¢þ
>C181185399
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1108512
1108600
+
Ser
CGA
-
¡û
>C191108255
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
744604
744516
-
Ser
CGA
-
¡û
>C191122099
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
969413
969325
-
Ser
CGA
-
¡û
>C191211054
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
1751261
1751349
+
Ser
CGA
-
¡û
>W09127980
ACLK01000001
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
9256
9168
-
Ser
CGA
[ENA]
¡û
>C151007151
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
614098
614186
+
Ser
CGA
[Ensembl]
¡û
>C11108861
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1108386
1108474
+
Ser
CGA
[Ensembl]
¡û
>C161078659
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
857225
857137
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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