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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.746066 (28 seq.)
>W1711487717
MKGI01000075
Bacteroidota
Cloacibacterium normanense [MKGI]
72964
72890
-
Thr
GGT
[ENA]
¡û
>W1712082019
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
110294
110366
+
Thr
GGT
[ENA]
¡û
>WENV180283622
OBID01001137
[OBID] metagenome; sludge
7325
7397
+
Thr
GGT
[ENA]
¡û
>WENV181171467
OEIV010236977
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
344
272
-
Thr
GGT
[ENA]
¡û
>W141291532
JASZ01000012
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
4689
4761
+
Thr
GGT
[ENA]
¡û
>WENV170010047
APMI01007416
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2523
2597
+
Thr
GGT
[ENA]
¡û
>WENV170658330
JTFP01087748
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
935
1009
+
Thr
GGT
[ENA]
¡û
>C191116455
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1207817
1207889
+
Thr
GGT
-
¡û
>C191120379
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
203987
204059
+
Thr
GGT
-
¡û
>W1910933654
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475250
475178
-
Thr
GGT
[ENA]
¡û
>W1810304717
PTPZ01000009
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
57859
57787
-
Thr
GGT
[ENA]
¡û
>W2010699766
JACHFI010000006
Bacteroidota
Chryseobacterium koreense DSM 25209 [JACHFI]
8761
8689
-
Thr
GGT
[ENA]
¡û
>W2010982290
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475250
475178
-
Thr
GGT
[ENA]
¡û
>W2011441474
RJTY01000051
Bacteroidota
Chryseobacterium haifense F4391 [RJTY]
43234
43162
-
Thr
GGT
[ENA]
¡û
>W2110030835
BMLV01000003
Bacteroidota
Cloacibacterium rupense CGMCC 1.7656 [BMLV]
276789
276717
-
Thr
GGT
[ENA]
¡û
>W2110259651
JACSPS010000001
Bacteroidota
Weeksellaceae bacterium Sa1CVA4 [JACSPS]
263818
263744
-
Thr
GGT
[ENA]
¡û
>W2110635617
JAHOPF010000003
Bacteroidota
Kaistella sp. DKR-2 [JAHOPF]
86831
86903
+
Thr
GGT
[ENA]
¡û
>C211298246
CP071953
Bacteroidota
Kaistella sp. PM-38 [CP071953]
1492657
1492585
-
Thr
GGT
-
¡û
>W2110716205
JAJAFT010000001
Bacteroidota
Kaistella anthropi CCUG 52764 [JAJAFT]
511325
511397
+
Thr
GGT
[ENA]
¡û
>C211424679
OU015319
Bacteroidota
Cloacibacterium caeni Isolate1 [OU015319]
1920974
1920902
-
Thr
GGT
-
¡û
>C211424838
OU015321
Bacteroidota
Cloacibacterium caeni Isolate2 [OU015321]
1798593
1798521
-
Thr
GGT
-
¡û
>C231241915
CP087583
Bacteroidota
Chryseobacterium faecale F4 [CP087583]
1815703
1815775
+
Thr
GGT
-
¡û
>C231345700
CP094532
Bacteroidota
Chryseobacterium suipulveris SC2-2 [CP094532]
601807
601879
+
Thr
GGT
-
¡û
>C231499008
CP104850
Bacteroidota
Cloacibacterium sp. TD35 [CP104850]
1200320
1200392
+
Thr
GGT
-
¡û
>W1511685321
LFNG01000020
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
26023
26097
+
Thr
GGT
[ENA]
¡û
>W1610095102
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331667
331739
+
Thr
GGT
[ENA]
¡û
>W1710097897
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331667
331739
+
Thr
GGT
[ENA]
¡û
>W1710525004
FNJE01000012
Bacteroidota
Cloacibacterium normanense [FNJE]
72961
72887
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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