This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.746481 (26 seq.)
>W1710931170
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21632
21558
-
Glu
TTC
[ENA]
¡û
>W1710931193
LOHE01000101
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
34341
34415
+
Glu
TTC
[ENA]
¡û
>WENV180096391
MTBK01127271
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
637
563
-
Glu
TTC
[ENA]
¡û
>WENV180346055
OBLN01022644
[OBLN] sediment metagenome; sediment
845
771
-
Glu
TTC
[ENA]
¡û
>WENV180660865
OCVV010971032
[OCVV] gut metagenome; gut
473
547
+
Glu
TTC
[ENA]
¡û
>WENV180660866
OCVV010971032
[OCVV] gut metagenome; gut
473
547
+
Glu
TTC
[ENA]
¡û
>W141214396
AZSU01000003
Bacillota
Schnuerera ultunensis DSM 10521 [AZSU]
843300
843226
-
Glu
TTC
[ENA]
¡û
>W141214415
AZSU01000004
Bacillota
Schnuerera ultunensis DSM 10521 [AZSU]
4525
4599
+
Glu
TTC
[ENA]
¡û
>WENV170643996
JMBV01019859
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
319
245
-
Glu
TTC
[ENA]
¡û
>WENV170644012
JMBV01021535
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
349
423
+
Glu
TTC
[ENA]
¡û
>WENV170644447
JMBW01016172
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
211
285
+
Glu
TTC
[ENA]
¡û
>WENV170644474
JMBW01018128
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
426
500
+
Glu
TTC
[ENA]
¡û
>WENV170645170
JMBX01011587
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
370
296
-
Glu
TTC
[ENA]
¡û
>C191135189
CP035130
Bacillota
Gudongella oleilytica W6 [CP035130]
1104081
1104155
+
Glu
TTC
-
¡û
>C191135211
CP035130
Bacillota
Gudongella oleilytica W6 [CP035130]
1447810
1447736
-
Glu
TTC
-
¡û
>W141557829
JHVL01000038
Bacillota
Clostridiisalibacter paucivorans DSM 22131 [JHVL]
20591
20665
+
Glu
TTC
[ENA]
¡û
>W2011337887
QXXA01000006
Bacillota
Senegalia massiliensis 583 [QXXA]
215242
215168
-
Glu
TTC
[ENA]
¡û
>W2011337917
QXXA01000048
Bacillota
Senegalia massiliensis 583 [QXXA]
169
95
-
Glu
TTC
[ENA]
¡û
>W2011957537
UZAQ01000001
Bacillota
Senegalia massiliensis SIT17 [UZAQ]
163110
163036
-
Glu
TTC
[ENA]
¡û
>W2011957555
UZAQ01000006
Bacillota
Senegalia massiliensis SIT17 [UZAQ]
25795
25721
-
Glu
TTC
[ENA]
¡û
>C231611797
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
1416544
1416618
+
Glu
TTC
-
¡û
>C231611808
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
1447708
1447782
+
Glu
TTC
-
¡û
>C231611820
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
4399118
4399044
-
Glu
TTC
-
¡û
>C231611827
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
3969930
3969856
-
Glu
TTC
-
¡û
>W1610788712
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21632
21558
-
Glu
TTC
[ENA]
¡û
>W1610788735
LOHE01000101
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
34341
34415
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK