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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74694 (53 seq.)
>W1711712006
MTBL01000007
Betaproteobacteria
Neisseria canis [MTBL]
25706
25792
+
Leu
CAG
[ENA]
¡û
>W1711712007
MTBL01000007
Betaproteobacteria
Neisseria canis [MTBL]
25827
25913
+
Leu
CAG
[ENA]
¡û
>W1711712043
MTBM01000001
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
150137
150051
-
Leu
CAG
[ENA]
¡û
>W1711712102
MTBN01000002
Betaproteobacteria
Neisseria animaloris [MTBN]
63936
63850
-
Leu
CAG
[ENA]
¡û
>WENV180453223
OBXL01004068
[OBXL] human gut metagenome; faeces
284
198
-
Leu
CAG
[ENA]
¢þ
>WENV180551556
OCJG01000765
[OCJG] human oral metagenome; human oral
169
255
+
Leu
CAG
[ENA]
¢þ
>WENV180722022
ODGL01054048
[ODGL] human metagenome; G_DNA_Subgingival plaque
97
11
-
Leu
CAG
[ENA]
¢þ
>WENV180819191
ODJR01000001
[ODJR] human metagenome; G_DNA_Tongue dorsum
143977
144063
+
Leu
CAG
[ENA]
¢þ
>WENV180829885
ODKB01000025
[ODKB] human metagenome; G_DNA_Tongue dorsum
99502
99588
+
Leu
CAG
[ENA]
¢þ
>WENV180829886
ODKB01000025
[ODKB] human metagenome; G_DNA_Tongue dorsum
99621
99707
+
Leu
CAG
[ENA]
¢þ
>WENV180842682
ODKM01133093
[ODKM] human metagenome; G_DNA_Buccal mucosa
87
1
-
Leu
CAG
[ENA]
¢þ
>WENV180896653
ODNI01001432
[ODNI] human metagenome; G_DNA_Tongue dorsum
9547
9461
-
Leu
CAG
[ENA]
¢þ
>WENV180979455
ODVC01000193
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
3912
3826
-
Leu
CAG
[ENA]
¢þ
>WENV180986590
ODVK01000125
[ODVK] human metagenome; G_DNA_Supragingival plaque
26903
26989
+
Leu
CAG
[ENA]
¢þ
>WENV180986643
ODVK01000255
[ODVK] human metagenome; G_DNA_Supragingival plaque
24836
24750
-
Leu
CAG
[ENA]
¢þ
>WENV180999820
ODVT01076109
[ODVT] human metagenome; G_DNA_Buccal mucosa
144
58
-
Leu
CAG
[ENA]
¢þ
>WENV181006084
ODWA01001268
[ODWA] human metagenome; G_DNA_Buccal mucosa
6645
6731
+
Leu
CAG
[ENA]
¢þ
>WENV181006435
ODWA01021561
[ODWA] human metagenome; G_DNA_Buccal mucosa
112
26
-
Leu
CAG
[ENA]
¢þ
>WENV181027503
ODXD01004926
[ODXD] human metagenome; G_DNA_Buccal mucosa
1138
1224
+
Leu
CAG
[ENA]
¢þ
>WENV181073218
OEAO01000032
[OEAO] human metagenome; G_DNA_Tongue dorsum
15823
15909
+
Leu
CAG
[ENA]
¢þ
>WENV181084876
OEAX01000288
[OEAX] human metagenome; G_DNA_Tongue dorsum
4684
4770
+
Leu
CAG
[ENA]
¢þ
>WENV181111840
OEEL01000006
[OEEL] human metagenome; G_DNA_Tongue dorsum
67615
67529
-
Leu
CAG
[ENA]
¢þ
>WENV181158236
OEIH01000055
[OEIH] human metagenome; G_DNA_Supragingival plaque
4334
4248
-
Leu
CAG
[ENA]
¢þ
>WENV181158812
OEIH01010659
[OEIH] human metagenome; G_DNA_Supragingival plaque
682
768
+
Leu
CAG
[ENA]
¢þ
>WENV183508228
OMHC01000222
[OMHC] human oral metagenome; human oral
257
171
-
Leu
CAG
[ENA]
¢þ
>C181198236
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
2209952
2209866
-
Leu
CAG
-
¡û
>C181199050
CP031325
Betaproteobacteria
Neisseria polysaccharea M18661 [CP031325]
122667
122753
+
Leu
CAG
-
¡û
>C181224105
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
1554747
1554833
+
Leu
CAG
-
¡û
>C191205908
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
2026838
2026752
-
Leu
CAG
-
¡û
>C191205909
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
2026717
2026631
-
Leu
CAG
-
¡û
>C191211128
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
189906
189820
-
Leu
CAG
-
¡û
>C191213631
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
1135968
1136054
+
Leu
CAG
-
¡û
>C191214471
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
2181375
2181289
-
Leu
CAG
-
¡û
>W1810120633
PHTC01000025
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
6586
6500
-
Leu
CAG
[ENA]
¡û
>W1810190052
PKJO01000013
Betaproteobacteria
Neisseria sicca UMB0321 [PKJO]
29420
29506
+
Leu
CAG
[ENA]
¡û
>W1810226984
POXA01000003
Betaproteobacteria
Neisseria wadsworthii C2008000421 [POXA]
39447
39533
+
Leu
CAG
[ENA]
¡û
>W1810226985
POXA01000003
Betaproteobacteria
Neisseria wadsworthii C2008000421 [POXA]
39568
39654
+
Leu
CAG
[ENA]
¡û
>W1810227275
POXF01000006
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
134461
134375
-
Leu
CAG
[ENA]
¡û
>W1810227878
POXR01000002
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
178565
178479
-
Leu
CAG
[ENA]
¡û
>W1810227972
POXT01000002
Betaproteobacteria
Neisseria polysaccharea C2013011231 [POXT]
3616
3702
+
Leu
CAG
[ENA]
¡û
>W1810228051
POXU01000006
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
134335
134249
-
Leu
CAG
[ENA]
¡û
>W1810228436
POYC01000001
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
25566
25480
-
Leu
CAG
[ENA]
¡û
>W1530025594
JVKZ01000012
Betaproteobacteria
Neisseria meningitidis 338.rep2_NMEN [JVKZ]
9449
9363
-
Leu
CAG
[ENA]
¡û
>W10109744
ADBE01000038
Betaproteobacteria
Neisseria polysaccharea ATCC 43768 [ADBE]
3595
3681
+
Leu
CAG
[ENA]
¡û
>W11112131
ADBE01000038
Betaproteobacteria
Neisseria polysaccharea ATCC 43768 [ADBE]
3595
3681
+
Leu
CAG
[ENA]
¡û
>W11175916
AFWQ01000019
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
44414
44500
+
Leu
CAG
[ENA]
¡û
>W11175993
AFWR01000040
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
134535
134449
-
Leu
CAG
[ENA]
¡û
>W11177519
AGAZ01000057
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
38593
38679
+
Leu
CAG
[ENA]
¡û
>W11177520
AGAZ01000057
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
38714
38800
+
Leu
CAG
[ENA]
¡û
>W1610617719
LGYH01000004
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
225492
225578
+
Leu
CAG
[ENA]
¡û
>W1610617720
LGYH01000004
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
225613
225699
+
Leu
CAG
[ENA]
¡û
>W1710743581
LGYH01000004
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
225492
225578
+
Leu
CAG
[ENA]
¡û
>W1710743582
LGYH01000004
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
225613
225699
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK