This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.746956 (60 seq.)
>W1710884198
LMWK01000028
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
162141
162215
+
Gln
TTG
[ENA]
¡û
>W1710884924
LMWV01000032
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
151184
151258
+
Gln
TTG
[ENA]
¡û
>W1711054342
LRTQ01000763
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
10654
10580
-
Gln
TTG
[ENA]
¡û
>W1711054392
LRTR01000320
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
29447
29373
-
Gln
TTG
[ENA]
¡û
>W131185432
ARTR01000069
Actinomycetota
Streptomyces sp. 303MFCol5.2 [ARTR]
102119
102045
-
Gln
TTG
[ENA]
¡û
>W131185473
ARTS01000040
Actinomycetota
Streptomyces sp. 351MFTsu5.1 [ARTS]
114360
114286
-
Gln
TTG
[ENA]
¡û
>W131241215
BARF01000135
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
30297
30371
+
Gln
TTG
[ENA]
¡û
>W131241238
BARG01000014
Actinomycetota
Streptomyces hokutonensis R1-NS-10 [BARG]
31897
31823
-
Gln
TTG
[ENA]
¡û
>W1711783156
MVNU01000878
Actinomycetota
Streptomyces scabiei [MVNU]
187
261
+
Gln
TTG
[ENA]
¡û
>WENV180039640
LLBY010110597
[LLBY] soil metagenome; soil from tomato rhizosphere
314
386
+
Gln
TTG
[ENA]
¡û
>C191089627
CP032427
Actinomycetota
Streptomyces griseorubiginosus 3E-1 [CP032427]
5543834
5543760
-
Gln
TTG
-
¡û
>C191187353
CP041168
Actinomycetota
Streptomyces griseorubiginosus BTU6 [CP041168]
3905577
3905651
+
Gln
TTG
-
¡û
>W141755459
JNWO01000032
Actinomycetota
Streptomyces xylophagus [JNWO]
107841
107767
-
Gln
TTG
[ENA]
¡û
>W141756431
JNXE01000027
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
36170
36096
-
Gln
TTG
[ENA]
¡û
>W141760813
JOAH01001940
Actinomycetota
Streptomyces sp. NRRL B-24501 [JOAH]
653
725
+
Gln
TTG
[ENA]
¡û
>W141767967
JOEY01000016
Actinomycetota
Streptomyces fulvoviolaceus [JOEY]
89838
89764
-
Gln
TTG
[ENA]
¡û
>W141808391
JPPX01000295
Actinomycetota
Streptomyces scabiei [JPPX]
48480
48406
-
Gln
TTG
[ENA]
¡û
>W141817988
JQLE01000032
Actinomycetota
Streptomyces mirabilis [JQLE]
117216
117144
-
Gln
TTG
[ENA]
¡û
>W1911553044
PCGU01000311
Actinomycetota
Streptomyces europaeiscabiei ST1229 [PCGU]
10602
10529
-
Gln
TTG
[ENA]
¡û
>W2010594610
JABERD010000083
Actinomycetota
S3(2020) [JABERD]
16061
16133
+
Gln
TTG
[ENA]
¡û
>W2011176624
PCGU01000311
Actinomycetota
Streptomyces europaeiscabiei ST1229 [PCGU]
10602
10529
-
Gln
TTG
[ENA]
¡û
>W2011367901
RBAM01000007
Actinomycetota
Streptomyces klenkii KCTC 29202 [RBAM]
440350
440278
-
Gln
TTG
[ENA]
¡û
>W2011434266
RJKZ01000001
Actinomycetota
Streptomyces griseorubiginosus SAI-142 [RJKZ]
4032643
4032717
+
Gln
TTG
[ENA]
¡û
>W2011625395
SLYY01000006
Actinomycetota
Streptomyces sp. BK205 [SLYY]
152838
152912
+
Gln
TTG
[ENA]
¡û
>W2012017854
VFMT01000001
Actinomycetota
Streptomyces sp. RJA2910 [VFMT]
1569806
1569878
+
Gln
TTG
[ENA]
¡û
>W2110039243
BMSA01000013
Actinomycetota
Streptomyces phaeofaciens JCM 4125 [BMSA]
129839
129911
+
Gln
TTG
[ENA]
¡û
>W2110436031
JAENRY010000131
Actinomycetota
Streptomyces sp. MBT65 [JAENRY]
25995
25923
-
Gln
TTG
[ENA]
¡û
>W2110436103
JAENRZ010000205
Actinomycetota
Streptomyces sp. MBT62 [JAENRZ]
872
944
+
Gln
TTG
[ENA]
¡û
>W2110438737
JAEQAZ010000201
Actinomycetota
Streptomyces sp. MBT53 [JAEQAZ]
12633
12705
+
Gln
TTG
[ENA]
¡û
>W2110483404
JAFEKX020000001
Actinomycetota
Streptomyces sp. P3 [JAFEKX]
5816791
5816719
-
Gln
TTG
[ENA]
¡û
>W2110483546
JAFELA020000001
Actinomycetota
Streptomyces sp. BD1-1 [JAFELA]
3989436
3989508
+
Gln
TTG
[ENA]
¡û
>W2110483605
JAFELB020000001
Actinomycetota
Streptomyces sp. AD2-3 [JAFELB]
4028413
4028485
+
Gln
TTG
[ENA]
¡û
>W2110483698
JAFELC020000001
Actinomycetota
Streptomyces sp. AD2-2 [JAFELC]
5947966
5947894
-
Gln
TTG
[ENA]
¡û
>C211144504
CP061281
Actinomycetota
Streptomyces sp. CRXT-Y-14 [CP061281]
4552937
4552865
-
Gln
TTG
-
¡û
>C241091953
CP045096
Actinomycetota
Streptomyces phaeolivaceus GY16 [CP045096]
4099448
4099520
+
Gln
TTG
-
¡û
>C241137613
CP049838
Actinomycetota
Streptomyces asoensis H2S5 [CP049838]
4340602
4340675
+
Gln
TTG
-
¡û
>W2110786370
WPBY01000004
Actinomycetota
Streptomyces sp. NRRL B-1677 [WPBY]
125669
125741
+
Gln
TTG
[ENA]
¡û
>C241199704
CP107766
Actinomycetota
Streptomyces griseorubiginosus NBC_00587 [CP107766]
5610772
5610700
-
Gln
TTG
-
¡û
>C241199771
CP107768
Actinomycetota
Streptomyces griseorubiginosus NBC_00586 [CP107768]
5611485
5611413
-
Gln
TTG
-
¡û
>C241200911
CP107841
Actinomycetota
Streptomyces europaeiscabiei NBC_00515 [CP107841]
4312868
4312941
+
Gln
TTG
-
¡û
>C241201247
CP107863
Actinomycetota
Streptomyces europaeiscabiei NBC_00497 [CP107863]
6584232
6584159
-
Gln
TTG
-
¡û
>C241201364
CP107866
Actinomycetota
Streptomyces europaeiscabiei NBC_00494 [CP107866]
4597087
4597160
+
Gln
TTG
-
¡û
>C241201497
CP107869
Actinomycetota
Streptomyces sp. NBC_00490 [CP107869]
4632708
4632780
+
Gln
TTG
-
¡û
>C241201879
CP107883
Actinomycetota
Streptomyces europaeiscabiei NBC_00480 [CP107883]
4815808
4815881
+
Gln
TTG
-
¡û
>C241205302
CP107972
Actinomycetota
Streptomyces europaeiscabiei NBC_00363 [CP107972]
6444749
6444676
-
Gln
TTG
-
¡û
>C241212865
CP109004
Actinomycetota
Streptomyces sp. NBC_00696 [CP109004]
4657219
4657292
+
Gln
TTG
-
¡û
>C241296095
CP130718
Actinomycetota
Streptomyces sp. NBC_01334 [CP130718]
4242708
4242782
+
Gln
TTG
-
¡û
>C241338225
CP137549
Actinomycetota
Streptomyces sp. N50 [CP137549]
3625371
3625443
+
Gln
TTG
-
¡û
>W1511511563
JXTE01000008
Actinomycetota
Streptomyces sp. WM6386 [JXTE]
138028
138100
+
Gln
TTG
[ENA]
¡û
>W1511620676
LCTL01000248
Actinomycetota
Streptomyces europaeiscabiei NRRL B-24443 [LCTL]
303
377
+
Gln
TTG
[ENA]
¡û
>W1610052351
BBHU01001838
Actinomycetota
Streptomyces phaeofaciens JCM 4814 [BBHU]
441
515
+
Gln
TTG
[ENA]
¡û
>W1610634416
LIRJ01000073
Actinomycetota
Streptomyces silaceus [LIRJ]
5058
5132
+
Gln
TTG
[ENA]
¡û
>W1610746124
LMWK01000028
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
162141
162215
+
Gln
TTG
[ENA]
¡û
>W1610746850
LMWV01000032
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
151184
151258
+
Gln
TTG
[ENA]
¡û
>W1610895530
LRTQ01000763
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
10654
10580
-
Gln
TTG
[ENA]
¡û
>W1610895580
LRTR01000320
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
29447
29373
-
Gln
TTG
[ENA]
¡û
>W1710048729
BBHU01001838
Actinomycetota
Streptomyces phaeofaciens JCM 4814 [BBHU]
441
515
+
Gln
TTG
[ENA]
¡û
>W1710082421
BDGW01000111
Actinomycetota
Streptomyces luteocolor [BDGW]
5053
5127
+
Gln
TTG
[ENA]
¡û
>W1710536769
FNTK01000001
Actinomycetota
Streptomyces sp. 3213.3 3213 [FNTK]
6521492
6521418
-
Gln
TTG
[ENA]
¡û
>W1710768793
LIRJ01000073
Actinomycetota
Streptomyces silaceus [LIRJ]
5058
5132
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK