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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74837 (24 seq.)
>W1711005316
LQNM01000011
Bacillota
Pediococcus pentosaceus [LQNM]
18693
18776
+
Leu
CAG
[ENA]
¡û
>W1711068934
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
16892
16975
+
Leu
CAG
[ENA]
¡û
>C171119492
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1135447
1135364
-
Leu
CAG
-
¡û
>C171126510
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1097986
1097903
-
Leu
CAG
-
¡û
>C017425
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
695336
695419
+
Leu
CAG
[Ensembl]
¡û
>WENV180279530
OBHX01046320
[OBHX] metagenome; feces
1086
1003
-
Leu
CAG
[ENA]
¢þ
>WENV180333701
OBLF01001688
[OBLF] metagenome; feces
4062
3979
-
Leu
CAG
[ENA]
¢þ
>W141241989
CAHU01000008
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
18568
18651
+
Leu
CAG
[ENA]
¡û
>WENV183790289
PPYF01411172
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16849
16932
+
Leu
CAG
[ENA]
¢þ
>W141402952
JDVW01000006
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
93139
93222
+
Leu
CAG
[ENA]
¡û
>WENV170659268
JXWR01002501
[JXWR] soil metagenome; rice field; ambient CO2
22442
22359
-
Leu
CAG
[ENA]
¢þ
>C181042786
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1710363
1710446
+
Leu
CAG
-
¡û
>C191023236
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
657095
657178
+
Leu
CAG
-
¡û
>W09101460
AAEV01000007
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
74717
74634
-
Leu
CAG
[ENA]
¡û
>C141009496
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
705999
706082
+
Leu
CAG
[Ensembl]
¡û
>W1911631280
PUFB01000007
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
312854
312771
-
Leu
CAG
[ENA]
¡û
>C161092358
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1304918
1304835
-
Leu
CAG
[Ensembl]
¡û
>W1610057784
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
19046
19129
+
Leu
CAG
[ENA]
¡û
>W1610528400
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
19237
19320
+
Leu
CAG
[ENA]
¡û
>W1610650086
LJIU01000003
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
17519
17602
+
Leu
CAG
[ENA]
¡û
>W1610855966
LQNM01000011
Bacillota
Pediococcus pentosaceus [LQNM]
18693
18776
+
Leu
CAG
[ENA]
¡û
>W1610909504
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
16892
16975
+
Leu
CAG
[ENA]
¡û
>W1710054483
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
19046
19129
+
Leu
CAG
[ENA]
¡û
>W1710629990
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
19237
19320
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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