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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74847 (34 seq.)
>C025670
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
502746
502658
-
Ser
TGA
-
¡û
>C025773
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
432763
432851
+
Ser
TGA
[Ensembl]
¡û
>W141070752
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
62545
62633
+
Ser
TGA
[ENA]
¡û
>W141082660
AUNF01000047
Thermotogota
Thermotoga sp. A7A [AUNF]
35883
35971
+
Ser
TGA
[ENA]
¡û
>WENV181408000
OGCH01000356
[OGCH] hot springs metagenome; hot springs
531
619
+
Ser
TGA
[ENA]
¢þ
>C08010884
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
450823
450911
+
Ser
TGA
[Ensembl]
¡û
>WENV170676166
LDZR01001289
[LDZR] terrestrial metagenome; oil reservoir sample K2
741
653
-
Ser
TGA
[ENA]
¢þ
>W09107446
ABIJ01000022
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
1407
1319
-
Ser
TGA
[ENA]
¡û
>W09112232
ABXR01000016
Thermotogota
Marinitoga piezophila KA3 [ABXR]
28245
28157
-
Ser
TGA
[ENA]
¡û
>C141011515
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
442871
442959
+
Ser
TGA
-
¡û
>W1910635456
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
53331
53243
-
Ser
TGA
[ENA]
¡û
>C09110630
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
186098
186186
+
Ser
TGA
[Ensembl]
¡û
>C151004260
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
450674
450762
+
Ser
TGA
[Ensembl]
¡û
>C151004306
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
442178
442266
+
Ser
TGA
[Ensembl]
¡û
>C151030620
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
463554
463642
+
Ser
TGA
[Ensembl]
¡û
>C151074630
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
502751
502663
-
Ser
TGA
[Ensembl]
¡û
>C151076984
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
502751
502663
-
Ser
TGA
[Ensembl]
¡û
>C151077030
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
502751
502663
-
Ser
TGA
[Ensembl]
¡û
>W10105840
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
78017
77929
-
Ser
TGA
[ENA]
¡û
>C10113519
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
257016
256928
-
Ser
TGA
[Ensembl]
¡û
>W11108160
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
78017
77929
-
Ser
TGA
[ENA]
¡û
>W11180780
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
830770
830858
+
Ser
TGA
[ENA]
¡û
>W121062172
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
46221
46133
-
Ser
TGA
[ENA]
¡û
>C131012520
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
502751
502663
-
Ser
TGA
-
¡û
>W1610540345
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
23445
23533
+
Ser
TGA
[ENA]
¡û
>W1610540401
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
284654
284742
+
Ser
TGA
[ENA]
¡û
>W1610540436
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
261012
261100
+
Ser
TGA
[ENA]
¡û
>W1610540481
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
78132
78044
-
Ser
TGA
[ENA]
¡û
>W1610612912
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
741
653
-
Ser
TGA
[ENA]
¡û
>W1710643366
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
23445
23533
+
Ser
TGA
[ENA]
¡û
>W1710643422
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
284654
284742
+
Ser
TGA
[ENA]
¡û
>W1710643457
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
261012
261100
+
Ser
TGA
[ENA]
¡û
>W1710643502
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
78132
78044
-
Ser
TGA
[ENA]
¡û
>W1710734194
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
741
653
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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