This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74975 (65 seq.)
>W1710793245
LJPB01000082
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
16072
15986
-
Leu
CAG
[ENA]
¡û
>W1711005428
LQNO01000006
Gammaproteobacteria
Proteus mirabilis [LQNO]
119525
119439
-
Leu
CAG
[ENA]
¡û
>W1711115656
LUAI01000071
Gammaproteobacteria
Proteus sp. HMSC14B05 [LUAI]
16898
16812
-
Leu
CAG
[ENA]
¡û
>W1711339052
MBTY01000034
Gammaproteobacteria
Proteus mirabilis [MBTY]
200449
200535
+
Leu
CAG
[ENA]
¡û
>W1711383816
MECU01000066
Gammaproteobacteria
Shigella sp. FC130 [MECU]
122923
123009
+
Leu
CAG
[ENA]
¡û
>W1711608764
MOSG01000016
Gammaproteobacteria
Proteus sp. H24 [MOSG]
55679
55765
+
Leu
CAG
[ENA]
¡û
>W1712109043
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
2193286
2193200
-
Leu
CAG
[ENA]
¡û
>C171121731
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
1087276
1087190
-
Leu
CAG
-
¡û
>W141043875
AMGU01000005
Gammaproteobacteria
Proteus mirabilis WGLW4 [AMGU]
16932
16846
-
Leu
CAG
[ENA]
¡û
>W141148115
AWXP01000012
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
94768
94854
+
Leu
CAG
[ENA]
¡û
>WENV182952973
OKVX01001058
[OKVX] human gut metagenome; human gut
3030
2944
-
Leu
CAG
[ENA]
¢þ
>WENV183772209
PPYF01016681
[PPYF] human gut metagenome; stool from patient with Crohn's disease
202981
203067
+
Leu
CAG
[ENA]
¢þ
>WENV183772351
PPYF01016762
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16944
16858
-
Leu
CAG
[ENA]
¢þ
>WENV183788556
PPYF01370161
[PPYF] human gut metagenome; stool from patient with Crohn's disease
19345
19259
-
Leu
CAG
[ENA]
¢þ
>WENV183788571
PPYF01370169
[PPYF] human gut metagenome; stool from patient with Crohn's disease
203099
203185
+
Leu
CAG
[ENA]
¢þ
>C181092331
CP023965
Gammaproteobacteria
Proteus vulgaris FDAARGOS_366 [CP023965]
1517010
1516924
-
Leu
CAG
-
¡û
>C181126081
CP026051
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [CP026051]
1717141
1717227
+
Leu
CAG
-
¡û
>C181126481
CP026059
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [CP026059]
3141918
3142004
+
Leu
CAG
-
¡û
>C181126606
CP026062
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [CP026062]
594930
594844
-
Leu
CAG
-
¡û
>C181174857
CP029133
Gammaproteobacteria
Proteus mirabilis AR379 [CP029133]
4182142
4182056
-
Leu
CAG
-
¡û
>C191099445
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
3501996
3502082
+
Leu
CAG
-
¡û
>C191118960
CP034090
Gammaproteobacteria
Proteus mirabilis PmSC1111 [CP034090]
4005452
4005366
-
Leu
CAG
-
¡û
>W1910857266
NBUT01000025
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
213375
213461
+
Leu
CAG
[ENA]
¡û
>W1910857382
NBVR01000020
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
204063
204149
+
Leu
CAG
[ENA]
¡û
>W1910905446
NGVR01000017
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
208455
208541
+
Leu
CAG
[ENA]
¡û
>W1910919000
NIBV01000001
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
643434
643348
-
Leu
CAG
[ENA]
¡û
>W1911137184
NOWA01000002
Gammaproteobacteria
Proteus mirabilis PM187 [NOWA]
114190
114276
+
Leu
CAG
[ENA]
¡û
>W1911137268
NOWB01000005
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
17034
16948
-
Leu
CAG
[ENA]
¡û
>W1911238009
NSCH01000011
Gammaproteobacteria
Photorhabdus sp. S12-55 [NSCH]
84650
84564
-
Leu
CAG
[ENA]
¡û
>W1911238026
NSCH01000018
Gammaproteobacteria
Photorhabdus sp. S12-55 [NSCH]
14095
14181
+
Leu
CAG
[ENA]
¡û
>W1911580965
PENT01000028
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
6193
6279
+
Leu
CAG
[ENA]
¡û
>W1911581010
PENU01000005
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
225572
225658
+
Leu
CAG
[ENA]
¡û
>W1911581110
PENV01000024
Gammaproteobacteria
Proteus genomosp. 4 4 str. ATCC 51469 [PENV]
35984
36070
+
Leu
CAG
[ENA]
¡û
>W1810011594
BGKS01000005
Gammaproteobacteria
Proteus mirabilis TUM11567 [BGKS]
37714
37628
-
Leu
CAG
[ENA]
¡û
>W1810011678
BGKT01000007
Gammaproteobacteria
Proteus mirabilis TUM11568 [BGKT]
80738
80824
+
Leu
CAG
[ENA]
¡û
>W1810011766
BGKU01000012
Gammaproteobacteria
Proteus mirabilis TUM11569 [BGKU]
49759
49845
+
Leu
CAG
[ENA]
¡û
>W1810011819
BGKV01000002
Gammaproteobacteria
Proteus mirabilis TUM11570 [BGKV]
37770
37684
-
Leu
CAG
[ENA]
¡û
>W1810011922
BGKW01000005
Gammaproteobacteria
Proteus mirabilis TUM11571 [BGKW]
198446
198532
+
Leu
CAG
[ENA]
¡û
>W1810081022
PENW01000034
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
97495
97581
+
Leu
CAG
[ENA]
¡û
>W1810081070
PENX01000005
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
220612
220698
+
Leu
CAG
[ENA]
¡û
>W1810081192
PENZ01000012
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
204801
204887
+
Leu
CAG
[ENA]
¡û
>W1810107108
PGWT01000011
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
142308
142394
+
Leu
CAG
[ENA]
¡û
>W1810295152
PTIJ01000020
Gammaproteobacteria
Proteus mirabilis 2150/3191 [PTIJ]
197334
197420
+
Leu
CAG
[ENA]
¡û
>W1810335224
PURY01000008
Gammaproteobacteria
Proteus mirabilis GER_MD10_1505_Pmi_049 [PURY]
16981
16895
-
Leu
CAG
[ENA]
¡û
>W1810339462
PUWU01000019
Gammaproteobacteria
Photorhabdus luminescens H3 [PUWU]
48765
48851
+
Leu
CAG
[ENA]
¡û
>W1810583189
QEXA01000009
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
8575
8489
-
Leu
CAG
[ENA]
¡û
>W1810595571
QGGA01000003
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
49851
49765
-
Leu
CAG
[ENA]
¡û
>W1810762180
QPMG01000005
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
220612
220698
+
Leu
CAG
[ENA]
¡û
>W1510651224
CVRZ01000004
Gammaproteobacteria
Proteus vulgaris CSUR P1868 [CVRZ]
51467
51553
+
Leu
CAG
[ENA]
¡û
>W1511393966
JTAW01000004
Gammaproteobacteria
Proteus mirabilis FDAARGOS_85 [JTAW]
1639325
1639411
+
Leu
CAG
[ENA]
¡û
>W1511394324
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
594926
594840
-
Leu
CAG
[ENA]
¡û
>W1511394365
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
3141732
3141818
+
Leu
CAG
[ENA]
¡û
>W1511395688
JTBP01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [JTBP]
1717111
1717197
+
Leu
CAG
[ENA]
¡û
>W1511447592
JUYT01000113
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
16906
16820
-
Leu
CAG
[ENA]
¡û
>W1511458687
JVJQ01000083
Gammaproteobacteria
Proteus mirabilis 373_PMIR [JVJQ]
57037
56951
-
Leu
CAG
[ENA]
¡û
>W1511461582
JVMQ01000083
Gammaproteobacteria
Proteus mirabilis 292_PMIR [JVMQ]
351
437
+
Leu
CAG
[ENA]
¡û
>W1511470088
JVWE01000001
Gammaproteobacteria
Proteus mirabilis 127_PMIR [JVWE]
16930
16844
-
Leu
CAG
[ENA]
¡û
>W1511471309
JVXV01000013
Gammaproteobacteria
Proteus mirabilis 1230_SSON [JVXV]
325
411
+
Leu
CAG
[ENA]
¡û
>W1511510872
JXSK01000012
Gammaproteobacteria
Photorhabdus luminescens subsp. luminescens DSM 3368 [JXSK]
59226
59140
-
Leu
CAG
[ENA]
¡û
>W1511512722
JXUR02000683
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
660
574
-
Leu
CAG
[ENA]
¡û
>W1511574087
LANL01000071
Gammaproteobacteria
Proteus mirabilis 25933 GTA [LANL]
15205
15119
-
Leu
CAG
[ENA]
¡û
>W1610540604
JSUO01000115
Gammaproteobacteria
Proteus mirabilis [JSUO]
98877
98963
+
Leu
CAG
[ENA]
¡û
>W1610657249
LJPB01000082
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
16072
15986
-
Leu
CAG
[ENA]
¡û
>W1610856078
LQNO01000006
Gammaproteobacteria
Proteus mirabilis [LQNO]
119525
119439
-
Leu
CAG
[ENA]
¡û
>W1710643625
JSUO01000115
Gammaproteobacteria
Proteus mirabilis [JSUO]
98877
98963
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK