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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.752243 (16 seq.)
>C025288
CT971583
Cyanobacteriota
Synechococcus sp. WH 7803 [CT971583]
525102
525031
-
Thr
TGT
[Ensembl]
¡û
>WENV170119765
CENJ01163278
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
72
+
Thr
TGT
[ENA]
¡û
>WENV170178416
CEOV01040481
[CEOV] marine metagenome genome assembly TARA_062_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
72
+
Thr
TGT
[ENA]
¡û
>WENV170211999
CEPW01132877
[CEPW] marine metagenome genome assembly TARA_038_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
922
993
+
Thr
TGT
[ENA]
¡û
>WENV170788256
MDSV01030574
[MDSV] marine metagenome; seawater
2787
2716
-
Thr
TGT
[ENA]
¡û
>WENV170846303
MDTA01040096
[MDTA] marine metagenome; seawater
7768
7839
+
Thr
TGT
[ENA]
¡û
>WENV170847943
MDTA01070691
[MDTA] marine metagenome; seawater
3306
3235
-
Thr
TGT
[ENA]
¡û
>WENV170848837
MDTA01085765
[MDTA] marine metagenome; seawater
4206
4135
-
Thr
TGT
[ENA]
¡û
>WENV170848990
MDTA01088239
[MDTA] marine metagenome; seawater
1372
1443
+
Thr
TGT
[ENA]
¡û
>WENV170851791
MDTA01137770
[MDTA] marine metagenome; seawater
2842
2913
+
Thr
TGT
[ENA]
¡û
>C151009085
CP006270
Cyanobacteriota
Synechococcus sp. KORDI-49 [CP006270]
2079866
2079795
-
Thr
TGT
[Ensembl]
¡û
>C211072379
CP047933
Cyanobacteriota
Synechococcus sp. A15-60 [CP047933]
539126
539055
-
Thr
TGT
-
¡û
>C211072557
CP047939
Cyanobacteriota
Synechococcus sp. BMK-MC-1 [CP047939]
574794
574723
-
Thr
TGT
-
¡û
>C211072647
CP047941
Cyanobacteriota
Synechococcus sp. NOUM97013 [CP047941]
523249
523178
-
Thr
TGT
-
¡û
>C211072913
CP047948
Cyanobacteriota
Synechococcus sp. A15-127 [CP047948]
477778
477707
-
Thr
TGT
-
¡û
>C211073309
CP047957
Cyanobacteriota
Synechococcus sp. A18-25c [CP047957]
511057
510986
-
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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