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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.753098 (28 seq.)
>W1710806111
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
117562
117636
+
Gln
CTG
[ENA]
¡û
>WENV183706373
PDWI01003969
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29425
29499
+
Gln
CTG
[ENA]
¡û
>WENV170418749
CEUM01064556
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
21083
21009
-
Gln
CTG
[ENA]
¡û
>WENV170437819
CEUU01070038
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
443
517
+
Gln
CTG
[ENA]
¡û
>WENV170440368
CEUV01092969
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
340
266
-
Gln
CTG
[ENA]
¡û
>WENV170470135
CEVF01157022
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
131
57
-
Gln
CTG
[ENA]
¡û
>WENV170903172
MDTD01197600
[MDTD] marine metagenome; seawater
28349
28275
-
Gln
CTG
[ENA]
¡û
>C181226996
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3189597
3189523
-
Gln
CTG
-
¡û
>W1911737994
QTZO01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
369165
369239
+
Gln
CTG
[ENA]
¡û
>W2011303441
QTZO01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
369165
369239
+
Gln
CTG
[ENA]
¡û
>W2011654873
SOBK01000001
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
223956
223882
-
Gln
CTG
[ENA]
¡û
>W2012405182
WODC01000012
Thermodesulfobacteriota
Pseudodesulfovibrio sp. F-1 [WODC]
528
454
-
Gln
CTG
[ENA]
¡û
>W2110515240
JAFMPN010000020
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
79457
79383
-
Gln
CTG
[ENA]
¡û
>C231004577
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
1541652
1541726
+
Gln
CTG
-
¡û
>W10111379
ADDI01000012
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
33053
32979
-
Gln
CTG
[ENA]
¡û
>C231343614
CP094380
Thermodesulfobacteriota
Pseudodesulfovibrio tunisiensis RB22 [CP094380]
1879205
1879131
-
Gln
CTG
-
¡û
>C231631026
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
3090422
3090496
+
Gln
CTG
-
¡û
>C241008578
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
3253844
3253770
-
Gln
CTG
-
¡û
>C241053621
CP040751
Thermodesulfobacteriota
Salidesulfovibrio onnuriiensis IOR2 [CP040751]
1499237
1499163
-
Gln
CTG
-
¡û
>C241109018
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2195399
2195325
-
Gln
CTG
-
¡û
>C241149575
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
2520668
2520594
-
Gln
CTG
-
¡û
>C241149577
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
2520361
2520287
-
Gln
CTG
-
¡û
>C11106888
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
947329
947255
-
Gln
CTG
[Ensembl]
¡û
>W11114322
ADDI01000012
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
33053
32979
-
Gln
CTG
[ENA]
¡û
>C161068284
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1440901
1440827
-
Gln
CTG
[Ensembl]
¡û
>W1610046077
BBCB01000133
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4561
4635
+
Gln
CTG
[ENA]
¡û
>W1710042873
BBCB01000133
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4561
4635
+
Gln
CTG
[ENA]
¡û
>W1710602290
FUYC01000002
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
43234
43160
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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