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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76090 (13 seq.)
>C171026822
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
2797284
2797370
+
Leu
TAA
-
¡û
>WENV180387051
OBPD01049084
[OBPD] marine metagenome; Sea Water
303
389
+
Leu
TAA
[ENA]
¡û
>WENV183700149
OZSS01110234
[OZSS] metagenome; Seawater sample
101
15
-
Leu
TAA
[ENA]
¡û
>WENV170138991
CENW01215887
[CENW] marine metagenome genome assembly TARA_032_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
298
+
Leu
TAA
[ENA]
¡û
>SRA1008968
SRR020491.80434
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
52
138
+
Leu
TAA
[SRA]
>C151095291
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
817983
818069
+
Leu
TAA
-
¡û
>C201075728
CP038904
Gammaproteobacteria
Piscirickettsia salmonis Psal-008 [CP038904]
2374572
2374486
-
Leu
TAA
-
¡û
>C201077120
CP039060
Gammaproteobacteria
Piscirickettsia salmonis Psal-099 [CP039060]
2378361
2378275
-
Leu
TAA
-
¡û
>C201077232
CP039070
Gammaproteobacteria
Piscirickettsia salmonis Psal-108 [CP039070]
2376830
2376744
-
Leu
TAA
-
¡û
>C201077288
CP039076
Gammaproteobacteria
Piscirickettsia salmonis Psal-109 [CP039076]
2376804
2376718
-
Leu
TAA
-
¡û
>C201211622
CP048052
Gammaproteobacteria
Piscirickettsia salmonis Ps-11091B [CP048052]
818075
818161
+
Leu
TAA
-
¡û
>C201211678
CP048056
Gammaproteobacteria
Piscirickettsia salmonis Ps-8942B [CP048056]
817721
817807
+
Leu
TAA
-
¡û
>C161062466
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
818165
818251
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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