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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.760959 (32 seq.)
>W1711056123
LRVM01000002
Bacillota
Anaerotignum neopropionicum [LRVM]
823
894
+
Gly
GCC
[ENA]
¡û
>WENV180871700
ODLN01203107
[ODLN] human metagenome; G_DNA_Stool
210
139
-
Gly
GCC
[ENA]
¡û
>WENV181073072
OEAN01143413
[OEAN] human metagenome; G_DNA_Stool
189
118
-
Gly
GCC
[ENA]
¡û
>WENV181242840
OFFG01004395
[OFFG] mouse gut metagenome; faeces
3279
3350
+
Gly
GCC
[ENA]
¡û
>WENV181259952
OFFW01007535
[OFFW] mouse gut metagenome; faeces
474
545
+
Gly
GCC
[ENA]
¡û
>WENV181266128
OFGB01014840
[OFGB] mouse gut metagenome; faeces
1667
1596
-
Gly
GCC
[ENA]
¡û
>WENV181283773
OFGQ01020005
[OFGQ] mouse gut metagenome; faeces
682
753
+
Gly
GCC
[ENA]
¡û
>WENV181289797
OFHA01001982
[OFHA] mouse gut metagenome; faeces
158
229
+
Gly
GCC
[ENA]
¡û
>WENV181300122
OFHN01000190
[OFHN] mouse gut metagenome; faeces
60060
59989
-
Gly
GCC
[ENA]
¡û
>WENV183704436
PDWI01000237
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
52076
52004
-
Gly
GCC
[ENA]
¡û
>WENV183707614
PDWI01009375
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7535
7606
+
Gly
GCC
[ENA]
¡û
>WENV183708465
PDWI01016365
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
24
96
+
Gly
GCC
[ENA]
¡û
>WENV183708926
PDWI01021510
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6235
6164
-
Gly
GCC
[ENA]
¡û
>WENV183710692
PDWI01051716
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2946
2875
-
Gly
GCC
[ENA]
¡û
>WENV183715374
PDWI01237691
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1093
1164
+
Gly
GCC
[ENA]
¡û
>WENV183719670
PDWJ01018294
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3533
3604
+
Gly
GCC
[ENA]
¡û
>WENV183720248
PDWJ01030333
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2803
2732
-
Gly
GCC
[ENA]
¡û
>WENV170635129
JDSF01000084
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
7352
7278
-
Gly
GCC
[ENA]
¡û
>WENV170635150
JDSF01000115
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
39604
39530
-
Gly
GCC
[ENA]
¡û
>WENV170635509
JDSG01000002
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
39758
39684
-
Gly
GCC
[ENA]
¡û
>WENV170635526
JDSG01000015
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
83519
83445
-
Gly
GCC
[ENA]
¡û
>WENV170638977
JFBN01604060
[JFBN] chicken gut metagenome; ceca of Broiler chicken
154
82
-
Gly
GCC
[ENA]
¡û
>C191193279
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
2829442
2829371
-
Gly
GCC
-
¡û
>C191193285
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
2391812
2391741
-
Gly
GCC
-
¡û
>W2110099997
CAJFIN010000028
Bacillota
Candidatus Neoanaerotignum galli [CAJFIN]
2346
2417
+
Gly
GCC
[ENA]
¡û
>C241185982
CP092441
Bacillota
Chakrabartyella piscis BP5G [CP092441]
917000
917071
+
Gly
GCC
-
¡û
>C241185998
CP092441
Bacillota
Chakrabartyella piscis BP5G [CP092441]
2817057
2816986
-
Gly
GCC
-
¡û
>C241185999
CP092441
Bacillota
Chakrabartyella piscis BP5G [CP092441]
2814580
2814509
-
Gly
GCC
-
¡û
>W2310011343
BNUF01000018
Bacillota
Clostridia bacterium MS499-75 [BNUF]
21213
21142
-
Gly
GCC
[ENA]
¡û
>C161068655
CP014223
Bacillota
Anaerotignum propionicum DSM 1682 X2 [CP014223]
2560364
2560293
-
Gly
GCC
[Ensembl]
¡û
>W1610897169
LRVM01000002
Bacillota
Anaerotignum neopropionicum [LRVM]
823
894
+
Gly
GCC
[ENA]
¡û
>W1710582549
FQUA01000021
Bacillota
Anaerotignum propionicum DSM 1682 [FQUA]
14433
14362
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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