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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7612 (44 seq.)
>W1710880605
LMSL01000019
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
63321
63229
-
Ser
GGA
[ENA]
¡û
>W1711147378
LVJP01003492
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
1
93
+
Ser
GGA
[ENA]
¡û
>W1711386246
MEFB01000053
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
8214
8122
-
Ser
GGA
[ENA]
¡û
>W1711506076
MKWC01000004
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
377553
377645
+
Ser
GGA
[ENA]
¡û
>W1711751265
MUNP01000048
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
45316
45224
-
Ser
GGA
[ENA]
¡û
>W131046192
AMSF01000037
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
55524
55432
-
Ser
GGA
[ENA]
¡û
>W131218962
ATYD01000198
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
5066
5158
+
Ser
GGA
[ENA]
¡û
>W131219056
ATYF01000018
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
54989
55081
+
Ser
GGA
[ENA]
¡û
>WENV180321186
OBKQ01141096
[OBKQ] soil metagenome; Clay
193
101
-
Ser
GGA
[ENA]
¢þ
>WENV181308002
OFIS01000096
[OFIS] sludge metagenome; sludge
29607
29699
+
Ser
GGA
[ENA]
¢þ
>WENV181401366
OFTX01000048
[OFTX] sludge metagenome; sludge
29578
29670
+
Ser
GGA
[ENA]
¢þ
>WENV181402110
OFTY01000126
[OFTY] sludge metagenome; sludge
55206
55114
-
Ser
GGA
[ENA]
¢þ
>W141151904
AXBJ01000024
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
60971
61063
+
Ser
GGA
[ENA]
¡û
>ENV08001251
ABMV01071359
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
17
-
Ser
GGA
[ENA]
¡û
>WENV170668065
LADL02000675
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1302
1394
+
Ser
GGA
[ENA]
¢þ
>C191003500
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
1318230
1318138
-
Ser
GGA
-
¡û
>C191138617
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1651844
1651752
-
Ser
GGA
-
¡û
>W141564952
JIBD01000016
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
537663
537571
-
Ser
GGA
[ENA]
¡û
>W1910821917
MWIO01000007
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
35087
35179
+
Ser
GGA
[ENA]
¡û
>W1910896608
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
174299
174207
-
Ser
GGA
[ENA]
¡û
>W1911199814
NRDP01000027
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
65428
65336
-
Ser
GGA
[ENA]
¡û
>W1810485588
QAVX01000012
Gammaproteobacteria
Dyella sp. C11 [QAVX]
140280
140372
+
Ser
GGA
[ENA]
¡û
>W1810597232
QGHC01000009
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
127297
127389
+
Ser
GGA
[ENA]
¡û
>W1810628332
QICJ01000002
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
593076
592984
-
Ser
GGA
[ENA]
¡û
>W1810783249
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
453319
453227
-
Ser
GGA
[ENA]
¡û
>W1810785100
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
165317
165225
-
Ser
GGA
[ENA]
¡û
>C151023715
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
1128307
1128399
+
Ser
GGA
[Ensembl]
¡û
>ENV09004030
ADIG01001046
Groundwater metagenome 4000601.lucy.pga.C1
277460
277552
+
Ser
GGA
[ENA]
¡û
>ENV09004057
ADIG01001682
Groundwater metagenome 4000601.lucy.pga.C1
692
600
-
Ser
GGA
[ENA]
¡û
>W1510018825
BBUM02000050
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
52919
52827
-
Ser
GGA
[ENA]
¡û
>W1511305046
JPLA01000003
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
93620
93712
+
Ser
GGA
[ENA]
¡û
>W1511686295
LFQR01000066
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
40447
40539
+
Ser
GGA
[ENA]
¡û
>W11180872
AGIL01000003
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
371552
371644
+
Ser
GGA
[ENA]
¡û
>C161078217
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
577877
577969
+
Ser
GGA
[Ensembl]
¡û
>W121071352
AJXV01000050
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
180129
180221
+
Ser
GGA
[ENA]
¡û
>W121113895
ALOY01000167
Gammaproteobacteria
Dyella japonica A8 [ALOY]
63944
64036
+
Ser
GGA
[ENA]
¡û
>C131003704
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
1565016
1565108
+
Ser
GGA
-
¡û
>W1610742951
LMSL01000019
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
63321
63229
-
Ser
GGA
[ENA]
¡û
>W1610958331
LVJP01003492
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
1
93
+
Ser
GGA
[ENA]
¡û
>W1710519822
FNFA01000013
Gammaproteobacteria
Dyella jiangningensis [FNFA]
73105
73197
+
Ser
GGA
[ENA]
¡û
>W1710541177
FNYC01000009
Gammaproteobacteria
Frateuria terrea [FNYC]
48057
47965
-
Ser
GGA
[ENA]
¡û
>W1710560310
FONH01000001
Gammaproteobacteria
Dyella marensis [FONH]
537519
537427
-
Ser
GGA
[ENA]
¡û
>W1710573400
FOXL01000005
Gammaproteobacteria
Frateuria terrea [FOXL]
48042
47950
-
Ser
GGA
[ENA]
¡û
>W1710575667
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
148097
148189
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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