This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76206 (62 seq.)
>W1710806651
LKBD01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
40434
40348
-
Leu
TAA
[ENA]
¡û
>W1710806658
LKBD01000122
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
3
89
+
Leu
TAA
[ENA]
¡û
>W141242111
CAHY01000068
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
9010
9096
+
Leu
TAA
[ENA]
¡û
>WENV182542012
OJAV01000277
[OJAV] seawater metagenome; Sea water
20172
20086
-
Leu
TAA
[ENA]
¢þ
>WENV182542791
OJAZ01002350
[OJAZ] seawater metagenome; Sea water
4095
4009
-
Leu
TAA
[ENA]
¢þ
>WENV182543402
OJBB01000035
[OJBB] seawater metagenome; Sea water
25896
25810
-
Leu
TAA
[ENA]
¢þ
>WENV182544216
OJBE01009080
[OJBE] seawater metagenome; Sea water
149
235
+
Leu
TAA
[ENA]
¢þ
>WENV182547166
OJBR01003907
[OJBR] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¢þ
>WENV182550145
OJBZ01005390
[OJBZ] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¢þ
>WENV182552532
OJCK01006341
[OJCK] seawater metagenome; Sea water
39
125
+
Leu
TAA
[ENA]
¢þ
>WENV182553629
OJCR01015505
[OJCR] seawater metagenome; Sea water
1601
1515
-
Leu
TAA
[ENA]
¢þ
>WENV182554932
OJCY01000022
[OJCY] seawater metagenome; Sea water
13442
13528
+
Leu
TAA
[ENA]
¢þ
>WENV182555796
OJDD01000904
[OJDD] seawater metagenome; Sea water
4768
4682
-
Leu
TAA
[ENA]
¢þ
>WENV182562241
OJDZ01000176
[OJDZ] seawater metagenome; Sea water
5852
5938
+
Leu
TAA
[ENA]
¢þ
>WENV182565753
OJEH01040242
[OJEH] seawater metagenome; Sea water
25
111
+
Leu
TAA
[ENA]
¢þ
>WENV182566721
OJEM01000940
[OJEM] seawater metagenome; Sea water
5607
5521
-
Leu
TAA
[ENA]
¢þ
>WENV182567660
OJEP01000018
[OJEP] seawater metagenome; Sea water
111189
111103
-
Leu
TAA
[ENA]
¢þ
>WENV182572062
OJFL01000195
[OJFL] seawater metagenome; Sea water
33019
33105
+
Leu
TAA
[ENA]
¢þ
>WENV182573142
OJFP01000161
[OJFP] seawater metagenome; Sea water
5319
5405
+
Leu
TAA
[ENA]
¢þ
>WENV182577075
OJGC01002473
[OJGC] seawater metagenome; Sea water
729
643
-
Leu
TAA
[ENA]
¢þ
>WENV182577701
OJGH01001579
[OJGH] seawater metagenome; Sea water
1123
1037
-
Leu
TAA
[ENA]
¢þ
>WENV182578501
OJGO01000216
[OJGO] seawater metagenome; Sea water
25896
25810
-
Leu
TAA
[ENA]
¢þ
>WENV182579301
OJGS01004881
[OJGS] seawater metagenome; Sea water
2325
2239
-
Leu
TAA
[ENA]
¢þ
>WENV182581229
OJGX01001162
[OJGX] seawater metagenome; Sea water
11099
11013
-
Leu
TAA
[ENA]
¢þ
>WENV182582847
OJHC01000858
[OJHC] seawater metagenome; Sea water
4682
4768
+
Leu
TAA
[ENA]
¢þ
>WENV182584392
OJHG01000114
[OJHG] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¢þ
>WENV182585814
OJHI01014524
[OJHI] seawater metagenome; Sea water
543
457
-
Leu
TAA
[ENA]
¢þ
>WENV182586808
OJHK01005760
[OJHK] seawater metagenome; Sea water
118
204
+
Leu
TAA
[ENA]
¢þ
>WENV182591044
OJIK01016000
[OJIK] seawater metagenome; Sea water
761
675
-
Leu
TAA
[ENA]
¢þ
>WENV182592379
OJIR01000190
[OJIR] seawater metagenome; Sea water
5319
5405
+
Leu
TAA
[ENA]
¢þ
>WENV183055426
OLHB01005513
[OLHB] seawater metagenome; Sea water
196
282
+
Leu
TAA
[ENA]
¢þ
>WENV183057350
OLHL01000524
[OLHL] seawater metagenome; Sea water
17518
17432
-
Leu
TAA
[ENA]
¢þ
>WENV183059829
OLHV01010112
[OLHV] seawater metagenome; Sea water
756
670
-
Leu
TAA
[ENA]
¢þ
>WENV170944221
MDTG01410377
[MDTG] marine metagenome; seawater
44626
44540
-
Leu
TAA
[ENA]
¢þ
>C181010692
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
1727817
1727731
-
Leu
TAA
-
¡û
>C181010697
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
1727118
1727032
-
Leu
TAA
-
¡û
>C181080583
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
1777640
1777554
-
Leu
TAA
-
¡û
>C181080588
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
1776941
1776855
-
Leu
TAA
-
¡û
>C191217655
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
2243043
2243129
+
Leu
TAA
-
¡û
>W1911618777
PPSX01000026
Gammaproteobacteria
Pseudoalteromonas phenolica S3898 [PPSX]
16493
16407
-
Leu
TAA
[ENA]
¡û
>W1911618783
PPSX01000026
Gammaproteobacteria
Pseudoalteromonas phenolica S3898 [PPSX]
15857
15771
-
Leu
TAA
[ENA]
¡û
>W1911618815
PPSX01000089
Gammaproteobacteria
Pseudoalteromonas phenolica S3898 [PPSX]
25654
25740
+
Leu
TAA
[ENA]
¡û
>W1911641231
PYHU01000025
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
56901
56987
+
Leu
TAA
[ENA]
¡û
>W1810016174
BGNG01000001
Gammaproteobacteria
Glaciecola sp. KUL10 [BGNG]
249253
249167
-
Leu
TAA
[ENA]
¡û
>W1810249375
PQCB01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
146843
146929
+
Leu
TAA
[ENA]
¡û
>C151061292
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2474973
2474887
-
Leu
TAA
[Ensembl]
¡û
>C151061297
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2474436
2474350
-
Leu
TAA
[Ensembl]
¡û
>C11100881
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
1875486
1875400
-
Leu
TAA
[Ensembl]
¡û
>C161051441
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
1837737
1837651
-
Leu
TAA
[Ensembl]
¡û
>C161052653
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2675488
2675402
-
Leu
TAA
[Ensembl]
¡û
>C161052655
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2675196
2675110
-
Leu
TAA
[Ensembl]
¡û
>C161052661
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2674406
2674320
-
Leu
TAA
[Ensembl]
¡û
>C161062095
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
1313939
1313853
-
Leu
TAA
-
¡û
>C161062272
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
1352501
1352415
-
Leu
TAA
-
¡û
>C161062302
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
1334396
1334310
-
Leu
TAA
-
¡û
>C161071090
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1290505
1290419
-
Leu
TAA
-
¡û
>C161086284
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
3602242
3602156
-
Leu
TAA
-
¡û
>C161086321
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
4581038
4581124
+
Leu
TAA
-
¡û
>W121025370
AHCE01000002
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
454958
455044
+
Leu
TAA
[ENA]
¡û
>W121025375
AHCE01000002
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
455657
455743
+
Leu
TAA
[ENA]
¡û
>W1610670425
LKBD01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
40434
40348
-
Leu
TAA
[ENA]
¡û
>W1610670432
LKBD01000122
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
3
89
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK