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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76252 (126 seq.)
>W1710934406
LOJF01000001
Actinomycetota
Tractidigestivibacter scatoligenes [LOJF]
190145
190231
+
Leu
CAG
[ENA]
¡û
>W1711093700
LTFF01000060
Actinomycetota
Olsenella sp. HMSC062G07 [LTFF]
2431
2345
-
Leu
CAG
[ENA]
¡û
>W1712039234
NFJN01000016
Actinomycetota
Gordonibacter urolithinfaciens [NFJN]
23477
23391
-
Leu
CAG
[ENA]
¡û
>C171131379
LT827128
Actinomycetota
Gordonibacter massiliensis [LT827128]
2710770
2710684
-
Leu
CAG
-
¡û
>WENV180141494
OATU01015622
[OATU] human gut metagenome; faeces
406
492
+
Leu
CAG
[ENA]
¡û
>WENV180187013
OAWV01004114
[OAWV] human gut metagenome; faeces
1103
1189
+
Leu
CAG
[ENA]
¡û
>WENV180319293
OBKN01000404
[OBKN] human gut metagenome; human gut
11602
11516
-
Leu
CAG
[ENA]
¡û
>WENV180728306
ODGU01037687
[ODGU] human metagenome; G_DNA_Supragingival plaque
1359
1445
+
Leu
CAG
[ENA]
¡û
>WENV180787759
ODIS01014201
[ODIS] human metagenome; G_DNA_Supragingival plaque
2491
2577
+
Leu
CAG
[ENA]
¡û
>WENV180796574
ODJB01007311
[ODJB] human metagenome; G_DNA_Supragingival plaque
1665
1751
+
Leu
CAG
[ENA]
¡û
>WENV180940118
ODTX01256217
[ODTX] human metagenome; G_DNA_Supragingival plaque
156
70
-
Leu
CAG
[ENA]
¡û
>WENV180944819
ODUC01038592
[ODUC] human metagenome; G_DNA_Supragingival plaque
312
226
-
Leu
CAG
[ENA]
¡û
>WENV180975785
ODUY01020229
[ODUY] human metagenome; G_DNA_Supragingival plaque
1499
1585
+
Leu
CAG
[ENA]
¡û
>WENV180998646
ODVT01001071
[ODVT] human metagenome; G_DNA_Buccal mucosa
5128
5042
-
Leu
CAG
[ENA]
¡û
>WENV181068202
ODZI01169908
[ODZI] human metagenome; G_DNA_Supragingival plaque
107
193
+
Leu
CAG
[ENA]
¡û
>WENV181092224
OEBC01352881
[OEBC] human metagenome; G_DNA_Supragingival plaque
91
177
+
Leu
CAG
[ENA]
¡û
>WENV181149441
OEHT01077135
[OEHT] human metagenome; G_DNA_Stool
86
1
-
Leu
CAG
[ENA]
¡û
>WENV181237456
OFFB01000271
[OFFB] mouse gut metagenome; faeces
18201
18287
+
Leu
CAG
[ENA]
¡û
>WENV181254910
OFFS01000009
[OFFS] mouse gut metagenome; faeces
75506
75420
-
Leu
CAG
[ENA]
¡û
>WENV181262675
OFFY01015679
[OFFY] mouse gut metagenome; faeces
1172
1258
+
Leu
CAG
[ENA]
¡û
>WENV181342636
OFMI01036604
[OFMI] human gut metagenome; human gut
709
795
+
Leu
CAG
[ENA]
¡û
>W141135966
AWEZ01000030
Actinomycetota
Olsenella profusa F0195 [AWEZ]
73242
73156
-
Leu
CAG
[ENA]
¡û
>WENV181419450
OGCN01000129
[OGCN] human gut metagenome; human gut
64111
64197
+
Leu
CAG
[ENA]
¡û
>W141145450
AWUP01000005
Actinomycetota
Coriobacteriaceae bacterium BV3Ac1 [AWUP]
274987
274901
-
Leu
CAG
[ENA]
¡û
>WENV181673924
OGOO01013684
[OGOO] human gut metagenome; faeces
1526
1440
-
Leu
CAG
[ENA]
¡û
>WENV181883694
OGXI01009582
[OGXI] human gut metagenome; faeces
2060
1974
-
Leu
CAG
[ENA]
¡û
>WENV182036030
OHDA01035429
[OHDA] human gut metagenome; feces
307
221
-
Leu
CAG
[ENA]
¡û
>WENV182065387
OHFA01002748
[OHFA] human gut metagenome; feces
3097
3011
-
Leu
CAG
[ENA]
¡û
>WENV182251125
OHST01006341
[OHST] human gut metagenome; feces
1529
1443
-
Leu
CAG
[ENA]
¡û
>WENV182362027
OICD01004014
[OICD] human gut metagenome; feces
429
515
+
Leu
CAG
[ENA]
¡û
>WENV182394154
OIEI01017378
[OIEI] human gut metagenome; human gut
68
154
+
Leu
CAG
[ENA]
¡û
>WENV182872613
OKRV01011046
[OKRV] human gut metagenome; faeces
2433
2519
+
Leu
CAG
[ENA]
¡û
>WENV182927019
OKUM01005547
[OKUM] human gut metagenome; feces
2380
2466
+
Leu
CAG
[ENA]
¡û
>WENV182930026
OKUQ01019371
[OKUQ] human gut metagenome; feces
930
844
-
Leu
CAG
[ENA]
¡û
>WENV183096949
OLNE01000493
[OLNE] human gut metagenome; faeces
12426
12340
-
Leu
CAG
[ENA]
¡û
>WENV183100610
OLNG01000147
[OLNG] human gut metagenome; faeces
13097
13183
+
Leu
CAG
[ENA]
¡û
>WENV183129725
OLOA01000138
[OLOA] human gut metagenome; faeces
6844
6758
-
Leu
CAG
[ENA]
¡û
>WENV183140591
OLOJ01000022
[OLOJ] human gut metagenome; faeces
32294
32208
-
Leu
CAG
[ENA]
¡û
>WENV183146131
OLOM01003584
[OLOM] human gut metagenome; faeces
2538
2452
-
Leu
CAG
[ENA]
¡û
>WENV183146284
OLOM01005416
[OLOM] human gut metagenome; faeces
1126
1212
+
Leu
CAG
[ENA]
¡û
>WENV183166660
OLOY01000456
[OLOY] human gut metagenome; faeces
16602
16516
-
Leu
CAG
[ENA]
¡û
>WENV183169889
OLPA01015388
[OLPA] human gut metagenome; faeces
2123
2037
-
Leu
CAG
[ENA]
¡û
>WENV183177015
OLPG01000130
[OLPG] human gut metagenome; faeces
12950
13036
+
Leu
CAG
[ENA]
¡û
>WENV183185045
OLPN01002556
[OLPN] human gut metagenome; faeces
7302
7388
+
Leu
CAG
[ENA]
¡û
>WENV183189735
OLPQ01007752
[OLPQ] human gut metagenome; faeces
2209
2295
+
Leu
CAG
[ENA]
¡û
>WENV183195105
OLPT01002122
[OLPT] human gut metagenome; faeces
8159
8245
+
Leu
CAG
[ENA]
¡û
>WENV183202595
OLPX01010176
[OLPX] human gut metagenome; faeces
510
424
-
Leu
CAG
[ENA]
¡û
>WENV183205564
OLPZ01017230
[OLPZ] human gut metagenome; faeces
1203
1289
+
Leu
CAG
[ENA]
¡û
>WENV183219323
OLQK01000206
[OLQK] human gut metagenome; faeces
61609
61523
-
Leu
CAG
[ENA]
¡û
>WENV183220387
OLQL01000042
[OLQL] human gut metagenome; faeces
64926
64840
-
Leu
CAG
[ENA]
¡û
>WENV183241463
OLRB01000049
[OLRB] human gut metagenome; faeces
43081
42995
-
Leu
CAG
[ENA]
¡û
>WENV183254856
OLRJ01016765
[OLRJ] human gut metagenome; faeces
1017
1103
+
Leu
CAG
[ENA]
¡û
>WENV183262732
OLRQ01006041
[OLRQ] human gut metagenome; faeces
1435
1349
-
Leu
CAG
[ENA]
¡û
>WENV183291297
OLSI01000758
[OLSI] human gut metagenome; faeces
16574
16488
-
Leu
CAG
[ENA]
¡û
>WENV183297624
OLSM01005732
[OLSM] human gut metagenome; faeces
4945
4859
-
Leu
CAG
[ENA]
¡û
>WENV183297996
OLSM01023126
[OLSM] human gut metagenome; faeces
487
573
+
Leu
CAG
[ENA]
¡û
>WENV183316369
OLVS01028664
[OLVS] human gut metagenome; feces
414
328
-
Leu
CAG
[ENA]
¡û
>WENV183322417
OLVX01002093
[OLVX] human gut metagenome; faeces
8985
8899
-
Leu
CAG
[ENA]
¡û
>WENV183350675
OLWX01004582
[OLWX] human gut metagenome; feces
2361
2447
+
Leu
CAG
[ENA]
¡û
>WENV183372266
OLXW01003261
[OLXW] human gut metagenome; feces
1075
989
-
Leu
CAG
[ENA]
¡û
>WENV183447853
OMCS01041850
[OMCS] human gut metagenome; feces
422
508
+
Leu
CAG
[ENA]
¡û
>WENV183538718
OOAH01036650
[OOAH] human gut metagenome; human gut
598
684
+
Leu
CAG
[ENA]
¡û
>WENV183792987
PPYF01468367
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17
103
+
Leu
CAG
[ENA]
¡û
>WENV170669768
LAHS01002378
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
14758
14672
-
Leu
CAG
[ENA]
¡û
>W1910237861
FPLI01000066
Actinomycetota
Olsenella phocaeensis Marseille-P2936 [FPLI]
16929
17015
+
Leu
CAG
[ENA]
¡û
>W1910340202
FTLR01000011
Actinomycetota
Olsenella urininfantis Marseille-P3197 [FTLR]
213190
213104
-
Leu
CAG
[ENA]
¡û
>W1910498704
FXXA01000002
Actinomycetota
Eggerthella timonensis Marseille-P3135 [FXXA]
316527
316441
-
Leu
CAG
[ENA]
¡û
>W1910550466
FZQX01000033
Actinomycetota
Raoultibacter massiliensis Marseille-P2849 [FZQX]
367
281
-
Leu
CAG
[ENA]
¡û
>W1911679820
QIBV01000001
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
333634
333720
+
Leu
CAG
[ENA]
¡û
>W1911680048
QIBZ01000008
Actinomycetota
Slackia isoflavoniconvertens DSM 22006 [QIBZ]
47962
48048
+
Leu
CAG
[ENA]
¡û
>W1810234447
PPEK01000008
Actinomycetota
Enteroscipio rubneri ResAG-96 [PPEK]
117575
117489
-
Leu
CAG
[ENA]
¡û
>W1810240647
PPTO01000005
Actinomycetota
Slackia isoflavoniconvertens OB21 GAM31 [PPTO]
51142
51056
-
Leu
CAG
[ENA]
¡û
>W1810240789
PPTR01000009
Actinomycetota
Gordonibacter sp. 28C [PPTR]
2009
2095
+
Leu
CAG
[ENA]
¡û
>W1810240830
PPTS01000001
Actinomycetota
Gordonibacter pamelaeae 3C [PPTS]
90000
89914
-
Leu
CAG
[ENA]
¡û
>W1810797976
QRMV01000014
Actinomycetota
Olsenella sp. AM05-7 [QRMV]
46848
46762
-
Leu
CAG
[ENA]
¡û
>W1810798115
QRMY01000017
Actinomycetota
Olsenella sp. AM04-33 [QRMY]
106
192
+
Leu
CAG
[ENA]
¡û
>W1810807921
QRVQ01000006
Actinomycetota
Olsenella sp. AF21-51 [QRVQ]
141476
141390
-
Leu
CAG
[ENA]
¡û
>C151090405
CP012069
Actinomycetota
Olsenella sp. oral taxon 807 F0089 [CP012069]
3079497
3079583
+
Leu
CAG
-
¡û
>W2010160499
CABDUX010000001
Actinomycetota
Raoultibacter sp. Marseille-P8396 [CABDUX]
521729
521815
+
Leu
CAG
[ENA]
¡û
>W2010262057
CABJMH020000017
Actinomycetota
Actinobacteria bacterium [CABJMH]
30312
30226
-
Leu
CAG
[ENA]
¡û
>W2010274330
CABKVJ020000009
Actinomycetota
Actinobacteria bacterium [CABKVJ]
319281
319367
+
Leu
CAG
[ENA]
¡û
>W2010275334
CABKWA020000002
Actinomycetota
Olegusella massiliensis [CABKWA]
816542
816456
-
Leu
CAG
[ENA]
¡û
>W2010285533
CABMLE010000008
Actinomycetota
Enteroscipio rubneri [CABMLE]
117575
117489
-
Leu
CAG
[ENA]
¡û
>W2010286178
CABMLQ010000001
Actinomycetota
Atopobiaceae bacterium [CABMLQ]
1975096
1975182
+
Leu
CAG
[ENA]
¡û
>W2010287693
CABMMS010000001
Actinomycetota
Gordonibacter pamelaeae [CABMMS]
90000
89914
-
Leu
CAG
[ENA]
¡û
>W2010288901
CABMNK010000005
Actinomycetota
Eggerthellaceae bacterium [CABMNK]
51142
51056
-
Leu
CAG
[ENA]
¡û
>W2010387070
FPLI01000066
Actinomycetota
Olsenella phocaeensis Marseille-P2936 [FPLI]
16929
17015
+
Leu
CAG
[ENA]
¡û
>W2010396832
FTLR01000011
Actinomycetota
Olsenella urininfantis Marseille-P3197 [FTLR]
213190
213104
-
Leu
CAG
[ENA]
¡û
>W2010418407
FXXA01000002
Actinomycetota
Eggerthella timonensis Marseille-P3135 [FXXA]
316527
316441
-
Leu
CAG
[ENA]
¡û
>W2010432089
FZQX01000033
Actinomycetota
Raoultibacter massiliensis Marseille-P2849 [FZQX]
367
281
-
Leu
CAG
[ENA]
¡û
>W2010492013
JAAKEC010000001
Actinomycetota
Adlercreutzia sp. ZJ176 [JAAKEC]
152773
152859
+
Leu
CAG
[ENA]
¡û
>W2010492060
JAAKED010000001
Actinomycetota
Adlercreutzia sp. ZJ305 [JAAKED]
152357
152443
+
Leu
CAG
[ENA]
¡û
>W2010492140
JAAKEE010000025
Actinomycetota
Adlercreutzia sp. ZJ242 [JAAKEE]
36341
36255
-
Leu
CAG
[ENA]
¡û
>W2010492180
JAAKEF010000015
Actinomycetota
Adlercreutzia sp. ZJ154 [JAAKEF]
12333
12247
-
Leu
CAG
[ENA]
¡û
>W2010492240
JAAKEG010000014
Actinomycetota
Adlercreutzia sp. ZJ304 [JAAKEG]
32386
32472
+
Leu
CAG
[ENA]
¡û
>W2010575209
JAAVTO010000031
Actinomycetota
Adlercreutzia sp. ZJ473 [JAAVTO]
31627
31541
-
Leu
CAG
[ENA]
¡û
>W2010585494
JABAHI010000008
Actinomycetota
Olsenella sp. KGMB02461 [JABAHI]
1323227
1323141
-
Leu
CAG
[ENA]
¡û
>W2010752401
JACMSE010000001
Actinomycetota
Gordonibacter massiliensis N22 [JACMSE]
397550
397464
-
Leu
CAG
[ENA]
¡û
>W2011257370
QIBV01000001
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
333634
333720
+
Leu
CAG
[ENA]
¡û
>W2011257598
QIBZ01000008
Actinomycetota
Slackia isoflavoniconvertens DSM 22006 [QIBZ]
47962
48048
+
Leu
CAG
[ENA]
¡û
>W2011257714
QICB01000007
Actinomycetota
Slackia faecicanis DSM 17537 [QICB]
5946
5860
-
Leu
CAG
[ENA]
¡û
>W2011319566
QWKK01000066
Actinomycetota
Enterorhabdus sp. P55 [QWKK]
6330
6244
-
Leu
CAG
[ENA]
¡û
>W2011957292
UYYE01000002
Actinomycetota
Adlercreutzia sp. Marseille-P7992 [UYYE]
263505
263591
+
Leu
CAG
[ENA]
¡û
>W2012139629
VTFY01000002
Actinomycetota
Eggerthella sp. HF-4214 [VTFY]
212767
212681
-
Leu
CAG
[ENA]
¡û
>W2012365541
WKPN01000001
Actinomycetota
Gordonibacter pamelaeae BIOML-A2 [WKPN]
436926
436840
-
Leu
CAG
[ENA]
¡û
>W2012368516
WKZA01000014
Actinomycetota
Gordonibacter urolithinfaciens BIOML-A1 [WKZA]
34030
34116
+
Leu
CAG
[ENA]
¡û
>W2012450151
WUYV01000001
Actinomycetota
Eggerthella sp. HF-1101 [WUYV]
346286
346372
+
Leu
CAG
[ENA]
¡û
>W2110102053
CAJFPK010000102
Actinomycetota
Gordonibacter urolithinfaciens [CAJFPK]
16136
16221
+
Leu
CAG
[ENA]
¡û
>W2110122321
CAJSZM010000024
Actinomycetota
Coriobacteriales bacterium [CAJSZM]
2901
2987
+
Leu
CAG
[ENA]
¡û
>W2110128839
CAJTHG010000001
Actinomycetota
Coriobacteriaceae bacterium [CAJTHG]
47595
47681
+
Leu
CAG
[ENA]
¡û
>W2110158352
JAASIO010000001
Actinomycetota
Gordonibacter massiliensis K34_2 [JAASIO]
426560
426474
-
Leu
CAG
[ENA]
¡û
>C201308838
LR698982
Actinomycetota
Gordonibacter urolithinfaciens [LR698982]
1540567
1540653
+
Leu
CAG
-
¡û
>C201309635
LR698994
Actinomycetota
Gordonibacter massiliensis [LR698994]
2710770
2710684
-
Leu
CAG
-
¡û
>W2110725798
JAJCHO010000007
Actinomycetota
Gordonibacter urolithinfaciens SL.1.24 [JAJCHO]
165863
165777
-
Leu
CAG
[ENA]
¡û
>W2110730767
JAJCNT010000013
Actinomycetota
Gordonibacter urolithinfaciens DFI.2.41 [JAJCNT]
47249
47163
-
Leu
CAG
[ENA]
¡û
>W2110733286
JAJCQY010000001
Actinomycetota
Gordonibacter pamelaeae DFI.1.107 [JAJCQY]
278210
278124
-
Leu
CAG
[ENA]
¡û
>C10102871
CP001682
Actinomycetota
Cryptobacterium curtum DSM 15641 [CP001682]
398594
398508
-
Leu
CAG
[Ensembl]
¡û
>W2310016719
BQNG01000001
Actinomycetota
Gordonibacter pamelaeae CE91-St32 [BQNG]
96478
96392
-
Leu
CAG
[ENA]
¡û
>C161035145
CP011402
Actinomycetota
Denitrobacterium detoxificans NPOH1 [CP011402]
1960303
1960217
-
Leu
CAG
[Ensembl]
¡û
>C161103602
FP929047
Actinomycetota
Gordonibacter pamelaeae 7-10-1-b 7-10-1-bT [FP929047]
1193745
1193831
+
Leu
CAG
[Ensembl]
¡û
>W121000516
ACVE01000002
Actinomycetota
Olsenella sp. oral taxon 809 oral taxon 809 str. F0356 [ACVE]
480301
480387
+
Leu
CAG
[ENA]
¡û
>W1610530088
JQCO01000002
Actinomycetota
Olsenella uli DSM 7084 [JQCO]
267698
267612
-
Leu
CAG
[ENA]
¡û
>W1610791937
LOJF01000001
Actinomycetota
Tractidigestivibacter scatoligenes [LOJF]
190145
190231
+
Leu
CAG
[ENA]
¡û
>WENV078633
AAQK01004449
Gut microbiome of Human (healthy human stool sample 7)
2199
2285
+
Leu
CAG
[ENA]
>W1710540406
FNWT01000003
Actinomycetota
Parafannyhessea umbonata [FNWT]
211198
211284
+
Leu
CAG
[ENA]
¡û
>W1710631678
JQCO01000002
Actinomycetota
Olsenella uli DSM 7084 [JQCO]
267698
267612
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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