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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76490 (32 seq.)
>W1711252449
LYPA01000041
Bacillota
Paenibacillus oryzae [LYPA]
608
695
+
Leu
CAG
[ENA]
¡û
>W1711252485
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
395053
395139
+
Leu
CAG
[ENA]
¡û
>W1711252486
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
428159
428074
-
Leu
CAG
[ENA]
¡û
>W1711252487
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
422170
422084
-
Leu
CAG
[ENA]
¡û
>W131235887
AULX01000005
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
616529
616442
-
Leu
CAG
[ENA]
¡û
>W1711827023
MXQD01000083
Bacillota
Paenibacillus sp. MY03 [MXQD]
24739
24653
-
Leu
CAG
[ENA]
¡û
>W131235886
AULX01000005
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
618179
618265
+
Leu
CAG
[ENA]
¡û
>W141080346
ATMT01000053
Bacillota
Paenibacillus alvei TS-15 [ATMT]
81826
81740
-
Leu
CAG
[ENA]
¡û
>WENV183734886
PJUA01000082
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
80878
80963
+
Leu
CAG
[ENA]
¢þ
>WENV183734887
PJUA01000082
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
82816
82904
+
Leu
CAG
[ENA]
¢þ
>C191007107
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
837798
837884
+
Leu
CAG
-
¡û
>C191007159
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
4083994
4083908
-
Leu
CAG
-
¡û
>C191125248
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
4954490
4954404
-
Leu
CAG
-
¡û
>C191125249
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
4949521
4949436
-
Leu
CAG
-
¡û
>W1910018495
BDQX01000289
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
808
894
+
Leu
CAG
[ENA]
¡û
>W1910154688
BILY01000049
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
35568
35482
-
Leu
CAG
[ENA]
¡û
>C09108183
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
222089
222175
+
Leu
CAG
[Ensembl]
¡û
>W1810860933
QTTN01000015
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
105765
105850
+
Leu
CAG
[ENA]
¡û
>W1511185298
JMDX01000029
Bacillota
Paenibacillus sp. E194 [JMDX]
32149
32063
-
Leu
CAG
[ENA]
¡û
>W1511320835
JQCR01000003
Bacillota
Paenibacillus wynnii DSM 18334 [JQCR]
266972
267057
+
Leu
CAG
[ENA]
¡û
>W1610047477
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
39254
39340
+
Leu
CAG
[ENA]
¡û
>W1610047478
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
37605
37518
-
Leu
CAG
[ENA]
¡û
>W121122908
AMBZ01000003
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
146330
146416
+
Leu
CAG
[ENA]
¡û
>W1611017237
LYPA01000041
Bacillota
Paenibacillus oryzae [LYPA]
608
695
+
Leu
CAG
[ENA]
¡û
>W1611017273
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
395053
395139
+
Leu
CAG
[ENA]
¡û
>W1611017274
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
428159
428074
-
Leu
CAG
[ENA]
¡û
>W1611017275
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
422170
422084
-
Leu
CAG
[ENA]
¡û
>W1710044082
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
39254
39340
+
Leu
CAG
[ENA]
¡û
>W1710044083
BBDI01000018
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
37605
37518
-
Leu
CAG
[ENA]
¡û
>W1710546651
FOCJ01000001
Bacillota
Paenibacillus sp. OV219 [FOCJ]
698223
698309
+
Leu
CAG
[ENA]
¡û
>W1710546652
FOCJ01000001
Bacillota
Paenibacillus sp. OV219 [FOCJ]
705555
705640
+
Leu
CAG
[ENA]
¡û
>W1710559606
FOMT01000004
Bacillota
Paenibacillus catalpae [FOMT]
773917
773831
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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