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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76517 (82 seq.)
>W1711271284
LZEW01000032
Gammaproteobacteria
Morganella psychrotolerans [LZEW]
155138
155224
+
Leu
CAG
[ENA]
¡û
>W1711271311
LZEX01000010
Gammaproteobacteria
Morganella psychrotolerans [LZEX]
36845
36931
+
Leu
CAG
[ENA]
¡û
>W1711271367
LZEY01000010
Gammaproteobacteria
Morganella psychrotolerans [LZEY]
34527
34613
+
Leu
CAG
[ENA]
¡û
>W1711383817
MECU01000066
Gammaproteobacteria
Shigella sp. FC130 [MECU]
123045
123131
+
Leu
CAG
[ENA]
¡û
>W1711608765
MOSG01000016
Gammaproteobacteria
Proteus sp. H24 [MOSG]
55804
55890
+
Leu
CAG
[ENA]
¡û
>W1712020024
NEYX01000025
Gammaproteobacteria
Proteus mirabilis [NEYX]
217169
217083
-
Leu
CAG
[ENA]
¡û
>W131251462
CAVM010000344
Gammaproteobacteria
Xenorhabdus nematophila F1 [CAVM]
4531
4617
+
Leu
CAG
[ENA]
¡û
>C009235
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
596788
596702
-
Leu
CAG
[Ensembl]
¡û
>W141148116
AWXP01000012
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
94896
94982
+
Leu
CAG
[ENA]
¡û
>W141253989
CBST010000056
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae France [CBST]
121194
121280
+
Leu
CAG
[ENA]
¡û
>W141254345
CBSY010000159
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Quebec [CBSY]
3765
3851
+
Leu
CAG
[ENA]
¡û
>WENV182595811
OJIY01000028
[OJIY] metagenome; faeces
17188
17102
-
Leu
CAG
[ENA]
¢þ
>WENV183066746
OLIL01000877
[OLIL] metagenome; faeces
11736
11650
-
Leu
CAG
[ENA]
¢þ
>WENV183066749
OLIL01000878
[OLIL] metagenome; faeces
6877
6963
+
Leu
CAG
[ENA]
¢þ
>WENV183788557
PPYF01370161
[PPYF] human gut metagenome; stool from patient with Crohn's disease
19223
19137
-
Leu
CAG
[ENA]
¢þ
>C181031886
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
642371
642285
-
Leu
CAG
-
¡û
>C181083794
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
4061771
4061685
-
Leu
CAG
-
¡û
>C181092332
CP023965
Gammaproteobacteria
Proteus vulgaris FDAARGOS_366 [CP023965]
1516884
1516798
-
Leu
CAG
-
¡û
>C181123765
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
3484320
3484234
-
Leu
CAG
-
¡û
>C181123800
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
291307
291221
-
Leu
CAG
-
¡û
>C181166443
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
291752
291838
+
Leu
CAG
-
¡û
>C181217514
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
268189
268275
+
Leu
CAG
-
¡û
>C191099409
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
268171
268257
+
Leu
CAG
-
¡û
>C191099446
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
3502131
3502217
+
Leu
CAG
-
¡û
>C191110560
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
3015409
3015495
+
Leu
CAG
-
¡û
>C191193572
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
268720
268806
+
Leu
CAG
-
¡û
>C191193606
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
3439883
3439969
+
Leu
CAG
-
¡û
>C191196182
LR134135
Gammaproteobacteria
Lelliottia amnigena NCTC12124 [LR134135]
573876
573790
-
Leu
CAG
-
¡û
>W09106379
AAVF01000004
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
196515
196429
-
Leu
CAG
[ENA]
¡û
>W09110517
ABVP01000021
Gammaproteobacteria
Proteus penneri ATCC 35198 [ABVP]
195201
195287
+
Leu
CAG
[ENA]
¡û
>W141804940
JPIX01000007
Gammaproteobacteria
Proteus vulgaris [JPIX]
217420
217334
-
Leu
CAG
[ENA]
¡û
>C141003757
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
879515
879429
-
Leu
CAG
[Ensembl]
¡û
>C141003770
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
272802
272716
-
Leu
CAG
[Ensembl]
¡û
>W1910857267
NBUT01000025
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
213500
213586
+
Leu
CAG
[ENA]
¡û
>W1910857383
NBVR01000020
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
204189
204275
+
Leu
CAG
[ENA]
¡û
>W1910905447
NGVR01000017
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
208579
208665
+
Leu
CAG
[ENA]
¡û
>W1910918924
NIBU01000009
Gammaproteobacteria
Xenorhabdus innexi DSM 16336 [NIBU]
21867
21781
-
Leu
CAG
[ENA]
¡û
>W1910918973
NIBV01000001
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
278197
278283
+
Leu
CAG
[ENA]
¡û
>W1910940003
NJAK01000001
Gammaproteobacteria
Xenorhabdus ishibashii DSM 22670 [NJAK]
2326035
2325949
-
Leu
CAG
[ENA]
¡û
>W1911580966
PENT01000028
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
6315
6401
+
Leu
CAG
[ENA]
¡û
>W1911581011
PENU01000005
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
225698
225784
+
Leu
CAG
[ENA]
¡û
>W1911581111
PENV01000024
Gammaproteobacteria
Proteus genomosp. 4 4 str. ATCC 51469 [PENV]
36108
36194
+
Leu
CAG
[ENA]
¡û
>W1810006161
BFCJ01000029
Gammaproteobacteria
Morganella morganii MH16-367M [BFCJ]
190
104
-
Leu
CAG
[ENA]
¡û
>W1810006182
BFCJ01000094
Gammaproteobacteria
Morganella morganii MH16-367M [BFCJ]
46397
46483
+
Leu
CAG
[ENA]
¡û
>W1810053163
PDDA01000001
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
107681
107767
+
Leu
CAG
[ENA]
¡û
>W1810080916
PENS01000008
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
225503
225589
+
Leu
CAG
[ENA]
¡û
>W1810081023
PENW01000034
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
97623
97709
+
Leu
CAG
[ENA]
¡û
>W1810081071
PENX01000005
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
220738
220824
+
Leu
CAG
[ENA]
¡û
>W1810081151
PENY01000022
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
202508
202594
+
Leu
CAG
[ENA]
¡û
>W1810081193
PENZ01000012
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
204915
205001
+
Leu
CAG
[ENA]
¡û
>W1810107109
PGWT01000011
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
142433
142519
+
Leu
CAG
[ENA]
¡û
>W1810107931
PHFJ01000009
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
17244
17158
-
Leu
CAG
[ENA]
¡û
>W1810116034
PHNN01000003
Gammaproteobacteria
Proteus vulgaris KCTC 2579 [PHNN]
210079
210165
+
Leu
CAG
[ENA]
¡û
>W1810147291
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
999747
999833
+
Leu
CAG
[ENA]
¡û
>W1810173822
PJNJ01000024
Gammaproteobacteria
Morganella morganii FAM24091 [PJNJ]
13547
13461
-
Leu
CAG
[ENA]
¡û
>W1810173823
PJNJ01000024
Gammaproteobacteria
Morganella morganii FAM24091 [PJNJ]
13412
13326
-
Leu
CAG
[ENA]
¡û
>W1810173828
PJNJ01000025
Gammaproteobacteria
Morganella morganii FAM24091 [PJNJ]
35693
35779
+
Leu
CAG
[ENA]
¡û
>W1810185335
PKFT01000003
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
241857
241943
+
Leu
CAG
[ENA]
¡û
>W1810185406
PKFU01000004
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
242291
242205
-
Leu
CAG
[ENA]
¡û
>W1810185491
PKFV01000005
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
242291
242205
-
Leu
CAG
[ENA]
¡û
>W1810266250
PQVR01000007
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
177189
177275
+
Leu
CAG
[ENA]
¡û
>W1810266319
PQVS01000005
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
252208
252294
+
Leu
CAG
[ENA]
¡û
>W1810266398
PQVT01000005
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
252208
252294
+
Leu
CAG
[ENA]
¡û
>W1810266479
PQVU01000005
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
252208
252294
+
Leu
CAG
[ENA]
¡û
>W1810266553
PQVV01000004
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
252208
252294
+
Leu
CAG
[ENA]
¡û
>W1810266635
PQVW01000005
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
252208
252294
+
Leu
CAG
[ENA]
¡û
>W1810583190
QEXA01000009
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
8461
8375
-
Leu
CAG
[ENA]
¡û
>W1810762181
QPMG01000005
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
220738
220824
+
Leu
CAG
[ENA]
¡û
>W1510651178
CVRY01000005
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
198542
198628
+
Leu
CAG
[ENA]
¡û
>W1511565680
LAGC01000002
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
33959
34045
+
Leu
CAG
[ENA]
¡û
>W1511565722
LAGC01000008
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
12184
12098
-
Leu
CAG
[ENA]
¡û
>W1511638115
LDNQ01000307
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
1644
1558
-
Leu
CAG
[ENA]
¡û
>C161090692
CP015774
Gammaproteobacteria
Lelliottia amnigena ZB04 [CP015774]
658551
658465
-
Leu
CAG
[Ensembl]
¡û
>W1610062435
BCNN01000008
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
240033
240119
+
Leu
CAG
[ENA]
¡û
>W1610077913
BCZU01000002
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
664907
664821
-
Leu
CAG
[ENA]
¡û
>W1610077961
BCZU01000006
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
11596
11510
-
Leu
CAG
[ENA]
¡û
>W1611030848
LZEW01000032
Gammaproteobacteria
Morganella psychrotolerans [LZEW]
155138
155224
+
Leu
CAG
[ENA]
¡û
>W1611030875
LZEX01000010
Gammaproteobacteria
Morganella psychrotolerans [LZEX]
36845
36931
+
Leu
CAG
[ENA]
¡û
>W1611030931
LZEY01000010
Gammaproteobacteria
Morganella psychrotolerans [LZEY]
34527
34613
+
Leu
CAG
[ENA]
¡û
>W1710059976
BCNN01000008
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
240033
240119
+
Leu
CAG
[ENA]
¡û
>W1710075471
BCZU01000002
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
664907
664821
-
Leu
CAG
[ENA]
¡û
>W1710075519
BCZU01000006
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
11596
11510
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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