This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.76664 (30 seq.)
>W131229527
AUGW01000007
Gammaproteobacteria
Oceanospirillum maris DSM 6286 [AUGW]
38964
38878
-
Leu
GAG
[ENA]
¡û
>W131235619
AULT01000009
Gammaproteobacteria
Oceanospirillum beijerinckii DSM 7166 [AULT]
141081
141167
+
Leu
GAG
[ENA]
¡û
>W1711711587
MTBA01000003
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
671116
671202
+
Leu
GAG
[ENA]
¡û
>W1711726842
MTSD02000008
Gammaproteobacteria
Oceanospirillum linum [MTSD]
91899
91985
+
Leu
GAG
[ENA]
¡û
>C171117518
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
825841
825755
-
Leu
GAG
-
¡û
>C171117982
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
2473540
2473626
+
Leu
GAG
-
¡û
>W131221020
AUAB01000019
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
33344
33258
-
Leu
GAG
[ENA]
¡û
>WENV170683462
LFIK01012321
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
3818
3732
-
Leu
GAG
[ENA]
¡û
>WENV170702625
LKMJ01002922
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
15818
15732
-
Leu
GAG
[ENA]
¡û
>W1911539907
ONZI01000005
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
89156
89242
+
Leu
GAG
[ENA]
¡û
>W1810444260
PZJN01000007
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
265919
265833
-
Leu
GAG
[ENA]
¡û
>W2010318719
CACSII010000001
Gammaproteobacteria
BD1-7 clade bacterium [CACSII]
204116
204030
-
Leu
GAG
[ENA]
¡û
>W2010538016
JAAQTO010000057
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
33452
33366
-
Leu
GAG
[ENA]
¡û
>W2010738643
JACJFM010000023
Gammaproteobacteria
Oceanospirillum sp. D5 [JACJFM]
38975
38889
-
Leu
GAG
[ENA]
¡û
>W2011170182
ONZI01000005
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
89156
89242
+
Leu
GAG
[ENA]
¡û
>W2110033990
BMOH01000010
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
81621
81535
-
Leu
GAG
[ENA]
¡û
>W2110050508
BMZM01000005
Gammaproteobacteria
Kushneria pakistanensis KCTC 42082 [BMZM]
24244
24158
-
Leu
GAG
[ENA]
¡û
>W2110496096
JAFFZO010000049
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
14366
14452
+
Leu
GAG
[ENA]
¡û
>W2110496165
JAFFZP010000048
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
14346
14432
+
Leu
GAG
[ENA]
¡û
>W2110500821
JAFIDL010000010
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
132071
132157
+
Leu
GAG
[ENA]
¡û
>W2110612312
JAHKQE010000034
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
14451
14537
+
Leu
GAG
[ENA]
¡û
>W2110663867
JAHYCA010000007
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
295699
295785
+
Leu
GAG
[ENA]
¡û
>C211000105
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3545875
3545789
-
Leu
GAG
-
¡û
>C211093701
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
4216940
4216854
-
Leu
GAG
-
¡û
>C211093762
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
4283743
4283657
-
Leu
GAG
-
¡û
>C231011260
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4652876
4652790
-
Leu
GAG
-
¡û
>C231011485
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4408138
4408052
-
Leu
GAG
-
¡û
>C241046705
CP038437
Gammaproteobacteria
Halomonas binhaiensis Y2R2 [CP038437]
4375256
4375170
-
Leu
GAG
-
¡û
>W1710538538
FNUP01000009
Gammaproteobacteria
Oleiphilus messinensis [FNUP]
39100
39014
-
Leu
GAG
[ENA]
¡û
>W1710557788
FOLH01000004
Gammaproteobacteria
Marinospirillum celere [FOLH]
402928
403014
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK