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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.767825 (18 seq.)
>W131160100
AQWH01000026
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
21839
21913
+
Gln
TTG
[ENA]
¡û
>C171105025
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
4021373
4021299
-
Gln
TTG
-
¡û
>W141180657
AYGY02000029
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
24193
24119
-
Gln
TTG
[ENA]
¡û
>W141200777
AYYG01000048
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
69451
69525
+
Gln
TTG
[ENA]
¡û
>WENV170229465
CEQG01122898
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
592
666
+
Gln
TTG
[ENA]
¡û
>WENV170499713
CEVT01184726
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2053
1979
-
Gln
TTG
[ENA]
¡û
>WENV170798530
MDSV01198299
[MDSV] marine metagenome; seawater
23158
23084
-
Gln
TTG
[ENA]
¡û
>WENV170822461
MDSY01040422
[MDSY] marine metagenome; seawater
211
285
+
Gln
TTG
[ENA]
¡û
>W1810365596
PVUG01000027
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
7538
7464
-
Gln
TTG
[ENA]
¡û
>W2010570156
JAATVV010000012
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
4141
4067
-
Gln
TTG
[ENA]
¡û
>W2010725250
JACIDZ010000003
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
336812
336886
+
Gln
TTG
[ENA]
¡û
>W2011627792
SMAR01000075
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
583
509
-
Gln
TTG
[ENA]
¡û
>W2011976171
VCLB01000015
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
494
420
-
Gln
TTG
[ENA]
¡û
>W2012031652
VHLG01000003
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
148122
148196
+
Gln
TTG
[ENA]
¡û
>C211232433
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
3377642
3377568
-
Gln
TTG
-
¡û
>C241169437
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
3510626
3510552
-
Gln
TTG
-
¡û
>C241169462
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
2918102
2918176
+
Gln
TTG
-
¡û
>C161070381
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
3136118
3136044
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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