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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77006 (17 seq.)
>W131224819
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
75302
75216
-
Leu
GAG
[ENA]
¡û
>W131224820
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
75083
74997
-
Leu
GAG
[ENA]
¡û
>W131224821
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
74563
74477
-
Leu
GAG
[ENA]
¡û
>W131224840
AUDC01000008
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
360417
360503
+
Leu
GAG
[ENA]
¡û
>W131224841
AUDC01000008
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
361318
361404
+
Leu
GAG
[ENA]
¡û
>WENV180043360
LQAH01036611
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
104
190
+
Leu
GAG
[ENA]
¢þ
>WENV183747711
PPCM01020378
[PPCM] marine sediment metagenome; marine sediment
469
555
+
Leu
GAG
[ENA]
¢þ
>WENV170645360
JMSV01000834
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
573
659
+
Leu
GAG
[ENA]
¢þ
>WENV170645390
JMSV01002390
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
874
960
+
Leu
GAG
[ENA]
¢þ
>W09118014
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
108739
108825
+
Leu
GAG
[ENA]
¡û
>W09118015
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
110099
110185
+
Leu
GAG
[ENA]
¡û
>C141011943
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2718599
2718513
-
Leu
GAG
-
¡û
>C141011944
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2718380
2718294
-
Leu
GAG
-
¡û
>C09104205
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2122331
2122417
+
Leu
GAG
[Ensembl]
¡û
>C09104206
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2123691
2123777
+
Leu
GAG
[Ensembl]
¡û
>C131018125
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2718599
2718513
-
Leu
GAG
[Ensembl]
¡û
>C131018126
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2718380
2718294
-
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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