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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77135 (59 seq.)
>W1710891314
LNCS01000012
Betaproteobacteria
Achromobacter xylosoxidans [LNCS]
722933
723019
+
Tyr
GTA
[ENA]
¡û
>W1711219910
LXPW01000036
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
121097
121183
+
Tyr
GTA
[ENA]
¡û
>W1711466747
MJMP01000040
Betaproteobacteria
Achromobacter xylosoxidans [MJMP]
1097
1011
-
Tyr
GTA
[ENA]
¡û
>C001899
AM167904
Betaproteobacteria
Bordetella avium 197N [AM167904]
5439
5525
+
Tyr
GTA
[Ensembl]
¡û
>WENV180003685
FLRN01022522
[FLRN] metagenome; saliva
105
19
-
Tyr
GTA
[ENA]
¢þ
>W141139334
AWNM01000013
Betaproteobacteria
Bordetella hinzii ATCC 51730 [AWNM]
562
476
-
Tyr
GTA
[ENA]
¡û
>W141202777
AZHL01000282
Betaproteobacteria
Achromobacter xylosoxidans X02736 [AZHL]
6216
6302
+
Tyr
GTA
[ENA]
¡û
>W141277460
JAEP01000008
Betaproteobacteria
Bordetella petrii J51 [JAEP]
334307
334393
+
Tyr
GTA
[ENA]
¡û
>WENV183679202
ORMF010028620
[ORMF] groundwater metagenome; groundwater
546
460
-
Tyr
GTA
[ENA]
¢þ
>WENV183686323
ORMF010983902
[ORMF] groundwater metagenome; groundwater
3405
3491
+
Tyr
GTA
[ENA]
¢þ
>WENV183690482
ORMF011605306
[ORMF] groundwater metagenome; groundwater
179
93
-
Tyr
GTA
[ENA]
¢þ
>WENV183695037
ORMF012325362
[ORMF] groundwater metagenome; groundwater
164
78
-
Tyr
GTA
[ENA]
¢þ
>W141383374
JDFP01000006
Betaproteobacteria
Bordetella holmesii 30539 [JDFP]
582015
582101
+
Tyr
GTA
[ENA]
¡û
>W141400851
JDSJ01000002
Betaproteobacteria
Bordetella holmesii 70147 [JDSJ]
581396
581482
+
Tyr
GTA
[ENA]
¡û
>WENV170553333
CXWK01015294
[CXWK] wastewater metagenome; activated sludge
1160
1074
-
Tyr
GTA
[ENA]
¢þ
>WENV170767912
LXNH01007867
[LXNH] seawater metagenome; marine seawater
671
585
-
Tyr
GTA
[ENA]
¢þ
>C181033892
CP018890
Betaproteobacteria
Bordetella holmesii [CP018890]
4820
4906
+
Tyr
GTA
-
¡û
>C181033946
CP018891
Betaproteobacteria
Bordetella holmesii [CP018891]
4820
4906
+
Tyr
GTA
-
¡û
>C181034162
CP018895
Betaproteobacteria
Bordetella holmesii [CP018895]
4820
4906
+
Tyr
GTA
-
¡û
>C181078154
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
6289799
6289713
-
Tyr
GTA
-
¡û
>C191026991
CP024172
Betaproteobacteria
Bordetella hinzii H720 [CP024172]
1645654
1645568
-
Tyr
GTA
-
¡û
>W141520767
JGWB01000109
Betaproteobacteria
Bordetella holmesii CDC-H785-BH [JGWB]
15135
15221
+
Tyr
GTA
[ENA]
¡û
>W141520821
JGWC01000170
Betaproteobacteria
Bordetella holmesii 04P3421 [JGWC]
1451
1365
-
Tyr
GTA
[ENA]
¡û
>W141520850
JGWD01000102
Betaproteobacteria
Bordetella holmesii CDC-H643-BH [JGWD]
538
452
-
Tyr
GTA
[ENA]
¡û
>W141532103
JHEQ01000035
Betaproteobacteria
Bordetella hinzii 5132 [JHEQ]
117217
117303
+
Tyr
GTA
[ENA]
¡û
>W1910890901
NEVP01000001
Betaproteobacteria
Bordetella genomosp. 5 5 AU10456 [NEVP]
178654
178568
-
Tyr
GTA
[ENA]
¡û
>W1911746280
QVSN01000015
Betaproteobacteria
Bordetella avium BA18 [QVSN]
536
450
-
Tyr
GTA
[ENA]
¡û
>W1911746503
QVSR01000020
Betaproteobacteria
Bordetella avium BA14 [QVSR]
536
450
-
Tyr
GTA
[ENA]
¡û
>W1911746559
QVSS01000020
Betaproteobacteria
Bordetella avium BA13 [QVSS]
12648
12734
+
Tyr
GTA
[ENA]
¡û
>W1911746724
QVSV01000018
Betaproteobacteria
Bordetella avium BA10 [QVSV]
536
450
-
Tyr
GTA
[ENA]
¡û
>W1911746842
QVSY01000001
Betaproteobacteria
Bordetella avium BA6 [QVSY]
644889
644975
+
Tyr
GTA
[ENA]
¡û
>W1911746961
QVTA01000001
Betaproteobacteria
Bordetella avium BA4 [QVTA]
319981
319895
-
Tyr
GTA
[ENA]
¡û
>W1810046967
OKRD01000131
Betaproteobacteria
Burkholderiales bacterium Peat soil MAG SbB1 [OKRD]
68341
68426
+
Tyr
GTA
[ENA]
¡û
>C151090206
CP012046
Betaproteobacteria
Achromobacter xylosoxidans MN001 [CP012046]
5825228
5825142
-
Tyr
GTA
[Ensembl]
¡û
>W1511318701
JPYO01000013
Betaproteobacteria
Achromobacter sp. RTa [JPYO]
226258
226172
-
Tyr
GTA
[ENA]
¡û
>W1511448503
JUZX01000177
Betaproteobacteria
Achromobacter xylosoxidans 617_AXYL [JUZX]
588
502
-
Tyr
GTA
[ENA]
¡û
>W1511642008
LDVI01000289
Betaproteobacteria
Achromobacter xylosoxidans A7 [LDVI]
549
463
-
Tyr
GTA
[ENA]
¡û
>W1511642078
LDVK01000276
Betaproteobacteria
Achromobacter xylosoxidans A9 [LDVK]
6238
6324
+
Tyr
GTA
[ENA]
¡û
>W1511642111
LDVL01000267
Betaproteobacteria
Achromobacter xylosoxidans A10 [LDVL]
6240
6326
+
Tyr
GTA
[ENA]
¡û
>W1511642141
LDVM01000416
Betaproteobacteria
Achromobacter xylosoxidans A11 [LDVM]
4560
4646
+
Tyr
GTA
[ENA]
¡û
>W1511642163
LDVN01000038
Betaproteobacteria
Achromobacter xylosoxidans A12 [LDVN]
31380
31466
+
Tyr
GTA
[ENA]
¡û
>W11172146
AFRQ01000039
Betaproteobacteria
Achromobacter insuavis AXX-A [AFRQ]
915
829
-
Tyr
GTA
[ENA]
¡û
>C161065041
CP014028
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_150 [CP014028]
2776383
2776297
-
Tyr
GTA
-
¡û
>W1610093671
CYTD01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
165991
166077
+
Tyr
GTA
[ENA]
¡û
>W1610093927
CYTI01000023
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
114212
114298
+
Tyr
GTA
[ENA]
¡û
>W1610094309
CYTQ01000019
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663426 [CYTQ]
114327
114413
+
Tyr
GTA
[ENA]
¡û
>W1610094459
CYTT01000021
Betaproteobacteria
Achromobacter sp. 2789STDY5608628 [CYTT]
585
499
-
Tyr
GTA
[ENA]
¡û
>W1610447578
FKBS01000006
Betaproteobacteria
Bordetella ansorpii [FKBS]
602
516
-
Tyr
GTA
[ENA]
¡û
>C131005657
CP003733
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii [ex Strigomonas [CP003733]
163820
163734
-
Tyr
GTA
[Ensembl]
¡û
>C131007248
CP003804
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii TCC036E [CP003804]
814844
814758
-
Tyr
GTA
[Ensembl]
¡û
>C131007374
CP003807
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii TCC012E [CP003807]
812927
812841
-
Tyr
GTA
[Ensembl]
¡û
>C131010822
CP003978
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii [ex Angomonas deanei [CP003978]
625746
625660
-
Tyr
GTA
[Ensembl]
¡û
>W1610751710
LNCS01000012
Betaproteobacteria
Achromobacter xylosoxidans [LNCS]
722933
723019
+
Tyr
GTA
[ENA]
¡û
>W1611004382
LXPW01000036
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
121097
121183
+
Tyr
GTA
[ENA]
¡û
>W1710096714
CYTD01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
165991
166077
+
Tyr
GTA
[ENA]
¡û
>W1710096970
CYTI01000023
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
114212
114298
+
Tyr
GTA
[ENA]
¡û
>W1710097310
CYTQ01000019
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663426 [CYTQ]
114327
114413
+
Tyr
GTA
[ENA]
¡û
>W1710097460
CYTT01000021
Betaproteobacteria
Achromobacter sp. 2789STDY5608628 [CYTT]
585
499
-
Tyr
GTA
[ENA]
¡û
>W1710447206
FKBS01000006
Betaproteobacteria
Bordetella ansorpii [FKBS]
602
516
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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