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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77137 (8 seq.)
>W131215445
ATVA01000007
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
790
876
+
Leu
CAA
[ENA]
¡û
>W131224600
AUCX01000024
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
41788
41874
+
Leu
CAA
[ENA]
¡û
>W09117999
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
28475
28561
+
Leu
CAA
[ENA]
¡û
>C09104244
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3702836
3702750
-
Leu
CAA
[Ensembl]
¡û
>W2010492400
JAAKEK010000001
Thermodesulfobacteriota
Desulfovibrio sp. ZJ746 [JAAKEK]
341608
341522
-
Leu
CAA
[ENA]
¡û
>W2012104568
VOIQ01000010
Thermodesulfobacteriota
Desulfovibrio sp. JC010 [VOIQ]
181783
181697
-
Leu
CAA
[ENA]
¡û
>W2012106367
VOPZ01000017
Thermodesulfobacteriota
Desulfovibrio sp. JC022 [VOPZ]
7877
7791
-
Leu
CAA
[ENA]
¡û
>W2012226851
WAIE01000004
Thermodesulfobacteriota
Desulfovibrio senegalensis DSM 101509 [WAIE]
1288
1374
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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