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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77228 (79 seq.)
>W1710865430
LMGQ01000028
Gammaproteobacteria
Pseudomonas sp. Root569 [LMGQ]
208240
208154
-
Leu
TAA
[ENA]
¡û
>W1711167958
LVWZ01000022
Gammaproteobacteria
Pseudomonas brenneri [LVWZ]
56274
56188
-
Leu
TAA
[ENA]
¡û
>W1711324604
MBDT01000032
Gammaproteobacteria
Pseudomonas sp. S3E12 [MBDT]
678772
678858
+
Leu
TAA
[ENA]
¡û
>W1711354563
MDFI01000052
Gammaproteobacteria
Pseudomonas salomonii [MDFI]
111605
111691
+
Leu
TAA
[ENA]
¡û
>W1711354654
MDFJ01000059
Gammaproteobacteria
Pseudomonas trivialis [MDFJ]
5463
5377
-
Leu
TAA
[ENA]
¡û
>W1711356708
MDGK01000009
Gammaproteobacteria
Pseudomonas extremorientalis [MDGK]
116414
116328
-
Leu
TAA
[ENA]
¡û
>W1711676303
MRST01000011
Gammaproteobacteria
Pseudomonas fluorescens [MRST]
8461
8375
-
Leu
TAA
[ENA]
¡û
>W1711688461
MSDH01000023
Gammaproteobacteria
Pseudomonas synxantha [MSDH]
61601
61515
-
Leu
TAA
[ENA]
¡û
>W1711688665
MSDL01000044
Gammaproteobacteria
Pseudomonas fluorescens [MSDL]
57617
57703
+
Leu
TAA
[ENA]
¡û
>C171040443
CP015638
Gammaproteobacteria
Pseudomonas fluorescens L111 [CP015638]
3528948
3528862
-
Leu
TAA
-
¡û
>W131190933
ASGY01000060
Gammaproteobacteria
Pseudomonas fluorescens LMG 5329 [ASGY]
3333
3247
-
Leu
TAA
[ENA]
¡û
>W141054838
AOHN01000020
Gammaproteobacteria
Pseudomonas sp. FH4 [AOHN]
32956
33042
+
Leu
TAA
[ENA]
¡û
>W141079334
ATLM01000011
Gammaproteobacteria
Pseudomonas sp. CFT9 [ATLM]
114819
114905
+
Leu
TAA
[ENA]
¡û
>W141079570
ATLQ01000085
Gammaproteobacteria
Pseudomonas sp. CF150 [ATLQ]
119156
119070
-
Leu
TAA
[ENA]
¡û
>W141217779
AZVU01000016
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I2 [AZVU]
67779
67865
+
Leu
TAA
[ENA]
¡û
>WENV183637270
OPGP01005001
[OPGP] human gut metagenome; Material from the ethmoid
315
401
+
Leu
TAA
[ENA]
¢þ
>WENV183637303
OPGP01028673
[OPGP] human gut metagenome; Material from the ethmoid
101
187
+
Leu
TAA
[ENA]
¢þ
>W141452461
JFCA01000016
Gammaproteobacteria
Pseudomonas sp. CHM02 [JFCA]
34964
35050
+
Leu
TAA
[ENA]
¡û
>C181078080
CP023269
Gammaproteobacteria
Pseudomonas sp. MYb193 [CP023269]
3180568
3180654
+
Leu
TAA
-
¡û
>C181078273
CP023272
Gammaproteobacteria
Pseudomonas lurida MYb11 [CP023272]
3166256
3166342
+
Leu
TAA
-
¡û
>C181092551
CP023969
Gammaproteobacteria
Pseudomonas sp. FDAARGOS_380 [CP023969]
4948088
4948002
-
Leu
TAA
-
¡û
>C181213033
LS483433
Gammaproteobacteria
Pseudomonas mucidolens NCTC8068 [LS483433]
2471474
2471560
+
Leu
TAA
-
¡û
>C191055014
CP027754
Gammaproteobacteria
Pseudomonas synxantha 30B [CP027754]
3594437
3594523
+
Leu
TAA
-
¡û
>C191055418
CP027760
Gammaproteobacteria
Pseudomonas sp. R4-34-07 [CP027760]
3163905
3163991
+
Leu
TAA
-
¡û
>C191055552
CP027762
Gammaproteobacteria
Pseudomonas sp. LBUM920 [CP027762]
3393022
3393108
+
Leu
TAA
-
¡û
>C191075117
CP031450
Gammaproteobacteria
Pseudomonas fluorescens SIK_W1 [CP031450]
3543673
3543759
+
Leu
TAA
-
¡û
>C191222192
LR590482
Gammaproteobacteria
Pseudomonas synxantha NCTC10696 [LR590482]
2783179
2783093
-
Leu
TAA
-
¡û
>W1910619355
LJSA01000377
Gammaproteobacteria
Pseudomonas sp. 2995-1 [LJSA]
645769
645855
+
Leu
TAA
[ENA]
¡û
>W1910620619
LKBY01000134
Gammaproteobacteria
Pseudomonas sp. ICMP 8385 [LKBY]
24500
24586
+
Leu
TAA
[ENA]
¡û
>W1910809687
MUHI01000003
Gammaproteobacteria
Pseudomonas fluorescens ATCC 13525 [MUHI]
94772
94686
-
Leu
TAA
[ENA]
¡û
>W1910840468
MZZJ01000011
Gammaproteobacteria
Pseudomonas azotoformans SC 14 [MZZJ]
161841
161927
+
Leu
TAA
[ENA]
¡û
>W1911386037
NVXX01000042
Gammaproteobacteria
Pseudomonas fluorescens PfR 37 [NVXX]
19438
19352
-
Leu
TAA
[ENA]
¡û
>W1911568854
PCQN01000012
Gammaproteobacteria
Pseudomonas poae MYb114 [PCQN]
52335
52249
-
Leu
TAA
[ENA]
¡û
>W1911613479
POFS01000038
Gammaproteobacteria
Pseudomonas sp. MPBC4-3 [POFS]
16412
16498
+
Leu
TAA
[ENA]
¡û
>W1911647422
QAJM01000002
Gammaproteobacteria
Pseudomonas sp. KBW05 [QAJM]
48670
48584
-
Leu
TAA
[ENA]
¡û
>W1911740988
QUZT01000014
Gammaproteobacteria
Pseudomonas nabeulensis E10B [QUZT]
20358
20272
-
Leu
TAA
[ENA]
¡û
>W1911741041
QUZU01000023
Gammaproteobacteria
Pseudomonas kairouanensis KC12 [QUZU]
12404
12318
-
Leu
TAA
[ENA]
¡û
>W1810111033
PHIJ01000001
Gammaproteobacteria
Pseudomonas sp. S10E 269 [PHIJ]
5430164
5430078
-
Leu
TAA
[ENA]
¡û
>W1810205899
POEG01000018
Gammaproteobacteria
Pseudomonas sp. GW460-4 [POEG]
7900
7814
-
Leu
TAA
[ENA]
¡û
>W1810205948
POEH01000010
Gammaproteobacteria
Pseudomonas sp. FW305-3-2-15-C-LB1 FW507-F4 [POEH]
73037
72951
-
Leu
TAA
[ENA]
¡û
>W1810206122
POEK01000009
Gammaproteobacteria
Pseudomonas sp. GW123-5D08 [POEK]
73037
72951
-
Leu
TAA
[ENA]
¡û
>W1810206244
POEM01000012
Gammaproteobacteria
Pseudomonas sp. GW123-5C08 [POEM]
124280
124366
+
Leu
TAA
[ENA]
¡û
>W1810208252
POFX01000044
Gammaproteobacteria
Pseudomonas sp. FW301-21B01 [POFX]
16412
16498
+
Leu
TAA
[ENA]
¡û
>W1810208378
POFZ01000063
Gammaproteobacteria
Pseudomonas sp. MPR-R5A [POFZ]
1451
1537
+
Leu
TAA
[ENA]
¡û
>W1810208567
POGC01000073
Gammaproteobacteria
Pseudomonas sp. MPR-LB5 [POGC]
1487
1573
+
Leu
TAA
[ENA]
¡û
>W1810208606
POGD01000040
Gammaproteobacteria
Pseudomonas sp. MPR-R5B [POGD]
16238
16324
+
Leu
TAA
[ENA]
¡û
>W1810209639
POGV01000012
Gammaproteobacteria
Pseudomonas sp. GW247-3R2A [POGV]
7874
7960
+
Leu
TAA
[ENA]
¡û
>W1810242386
PPVD01000016
Gammaproteobacteria
Pseudomonas fluorescens PL5.4 [PPVD]
54122
54036
-
Leu
TAA
[ENA]
¡û
>W1810365619
PVUH01000011
Gammaproteobacteria
Pseudomonas fluorescens 11293 [PVUH]
155202
155288
+
Leu
TAA
[ENA]
¡û
>W1810365669
PVUI01000005
Gammaproteobacteria
Pseudomonas fluorescens 80446/1 [PVUI]
224575
224661
+
Leu
TAA
[ENA]
¡û
>W1810365855
PVUL01000003
Gammaproteobacteria
Pseudomonas simiae 73148/1 [PVUL]
315975
316061
+
Leu
TAA
[ENA]
¡û
>W1810676497
QKMB01000002
Gammaproteobacteria
Pseudomonas sp. OV286 [QKMB]
125649
125735
+
Leu
TAA
[ENA]
¡û
>W1810784939
QRBA01000009
Gammaproteobacteria
Pseudomonas fluorescens AHK-1 [QRBA]
4231
4145
-
Leu
TAA
[ENA]
¡û
>C151039438
CP008896
Gammaproteobacteria
Pseudomonas fluorescens UK4 [CP008896]
410876
410790
-
Leu
TAA
[Ensembl]
¡û
>C151073971
CP010896
Gammaproteobacteria
Pseudomonas simiae PCL1751 [CP010896]
3133679
3133593
-
Leu
TAA
[Ensembl]
¡û
>W1511350356
JRMC01000003
Gammaproteobacteria
Pseudomonas simiae 2-36 [JRMC]
364300
364386
+
Leu
TAA
[ENA]
¡û
>W1511509091
JXQT01000042
Gammaproteobacteria
Pseudomonas simiae MEB105 [JXQT]
799442
799528
+
Leu
TAA
[ENA]
¡û
>W1511563587
LACF01000010
Gammaproteobacteria
Pseudomonas marginalis H21 [LACF]
99758
99672
-
Leu
TAA
[ENA]
¡û
>C121004431
CP003041
Gammaproteobacteria
Pseudomonas fluorescens A506 [CP003041]
3057316
3057402
+
Leu
TAA
[Ensembl]
¡û
>W121039029
AHPN01000001
Gammaproteobacteria
Pseudomonas lactis SS101 [AHPN]
4720299
4720385
+
Leu
TAA
[ENA]
¡û
>W1610086415
CVTL01000002
Gammaproteobacteria
Pseudomonas sp. 31 E 6 [CVTL]
221043
221129
+
Leu
TAA
[ENA]
¡û
>W1610086762
CVTQ01000024
Gammaproteobacteria
Pseudomonas sp. 35 E 8 [CVTQ]
275715
275801
+
Leu
TAA
[ENA]
¡û
>W1610086989
CVTU01000041
Gammaproteobacteria
Pseudomonas sp. 44 R 15 [CVTU]
14606
14520
-
Leu
TAA
[ENA]
¡û
>W121033163
AHIP01000002
Gammaproteobacteria
Pseudomonas extremaustralis 14-3 substr. 14-3b [AHIP]
62457
62371
-
Leu
TAA
[ENA]
¡û
>W1610521173
JJOE01000031
Gammaproteobacteria
Pseudomonas fluorescens [JJOE]
12847
12761
-
Leu
TAA
[ENA]
¡û
>W1610540523
JSFL01000047
Gammaproteobacteria
Pseudomonas fluorescens [JSFL]
29410
29496
+
Leu
TAA
[ENA]
¡û
>W1610551997
JYLN01000007
Gammaproteobacteria
Pseudomonas paralactis DSM 29164 [JYLN]
42809
42895
+
Leu
TAA
[ENA]
¡û
>W1610585647
LCYA01000066
Gammaproteobacteria
Pseudomonas fluorescens [LCYA]
156418
156332
-
Leu
TAA
[ENA]
¡û
>W1610727776
LMGQ01000028
Gammaproteobacteria
Pseudomonas sp. Root569 [LMGQ]
208240
208154
-
Leu
TAA
[ENA]
¡û
>W1610978027
LVWZ01000022
Gammaproteobacteria
Pseudomonas brenneri [LVWZ]
56274
56188
-
Leu
TAA
[ENA]
¡û
>W1710505913
FMUC01000007
Gammaproteobacteria
Pseudomonas sp. NFACC25 [FMUC]
13558
13472
-
Leu
TAA
[ENA]
¡û
>W1710530665
FNOX01000014
Gammaproteobacteria
Pseudomonas salomonii [FNOX]
116405
116319
-
Leu
TAA
[ENA]
¡û
>W1710535800
FNSU01000003
Gammaproteobacteria
Pseudomonas marginalis [FNSU]
1138535
1138621
+
Leu
TAA
[ENA]
¡û
>W1710575864
FOZO01000001
Gammaproteobacteria
Pseudomonas sp. NFACC42-2 [FOZO]
313895
313981
+
Leu
TAA
[ENA]
¡û
>W1710580478
FPJJ01000003
Gammaproteobacteria
Pseudomonas sp. NFR02 [FPJJ]
532797
532883
+
Leu
TAA
[ENA]
¡û
>W1710619580
JJOE01000031
Gammaproteobacteria
Pseudomonas fluorescens [JJOE]
12847
12761
-
Leu
TAA
[ENA]
¡û
>W1710643544
JSFL01000047
Gammaproteobacteria
Pseudomonas fluorescens [JSFL]
29410
29496
+
Leu
TAA
[ENA]
¡û
>W1710662270
JYLN01000007
Gammaproteobacteria
Pseudomonas paralactis DSM 29164 [JYLN]
42809
42895
+
Leu
TAA
[ENA]
¡û
>W1710704838
LCYA01000066
Gammaproteobacteria
Pseudomonas fluorescens [LCYA]
156418
156332
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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