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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.775142 (25 seq.)
>WENV183745333
PJUL01026853
[PJUL] feces metagenome; Chicken feces enriched on filter paper
188
260
+
Glu
TTC
[ENA]
¡û
>WENV170980844
MWVT01003330
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
1703
1629
-
Glu
TTC
[ENA]
¡û
>WENV170985025
MWVW01011798
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
84
158
+
Glu
TTC
[ENA]
¡û
>WENV170985746
MWVX01001577
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
7018
6944
-
Glu
TTC
[ENA]
¡û
>WENV170987666
MWVX01241484
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
527
453
-
Glu
TTC
[ENA]
¡û
>WENV170988011
MWVX01340423
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
373
445
+
Glu
TTC
[ENA]
¡û
>WENV170989205
MWVZ01003715
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
2004
1930
-
Glu
TTC
[ENA]
¡û
>WENV170990267
MWWA01000190
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
9380
9454
+
Glu
TTC
[ENA]
¡û
>WENV170990557
MWWA01017132
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
653
579
-
Glu
TTC
[ENA]
¡û
>WENV170992314
MWWB01015429
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
179
253
+
Glu
TTC
[ENA]
¡û
>WENV170994091
MWWD01011134
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
356
282
-
Glu
TTC
[ENA]
¡û
>WENV170994579
MWWE01009516
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1454
1528
+
Glu
TTC
[ENA]
¡û
>WENV170994971
MWWE01103276
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
428
354
-
Glu
TTC
[ENA]
¡û
>WENV170995089
MWWE01149328
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
105
31
-
Glu
TTC
[ENA]
¡û
>WENV170995283
MWWF01000041
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
8155
8081
-
Glu
TTC
[ENA]
¡û
>WENV170998041
MWWI01002272
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
224
150
-
Glu
TTC
[ENA]
¡û
>C191085395
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
4976386
4976458
+
Glu
TTC
-
¡û
>W2010544169
JAARML010000001
Bacteroidota
Pseudoflavitalea sp. X16 [JAARML]
2382257
2382185
-
Glu
TTC
[ENA]
¡û
>W2011578076
SGXA01000002
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
2591635
2591563
-
Glu
TTC
[ENA]
¡û
>W2011578077
SGXA01000002
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
2590079
2590007
-
Glu
TTC
[ENA]
¡û
>C241065878
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
514469
514541
+
Glu
TTC
-
¡û
>C241065879
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
516024
516096
+
Glu
TTC
-
¡û
>C241325430
CP135920
Bacteroidota
Paraflavitalea speifideaquila BL16E [CP135920]
7282167
7282239
+
Glu
TTC
-
¡û
>C241325431
CP135920
Bacteroidota
Paraflavitalea speifideaquila BL16E [CP135920]
7282375
7282447
+
Glu
TTC
-
¡û
>W1710583474
FQUU01000022
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
71611
71685
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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