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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779516 (23 seq.)
>C171046528
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
10277521
10277594
+
Gln
TTG
-
¡û
>WENV180027899
FTIZ01224787
[FTIZ] metagenome; soil
151
80
-
Gln
TTG
[ENA]
¢þ
>W141073096
ASRX01000017
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
118344
118271
-
Gln
TTG
[ENA]
¡û
>C08008924
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
11008299
11008372
+
Gln
TTG
[Ensembl]
¡û
>C181012492
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
12711044
12711116
+
Gln
TTG
-
¡û
>C191010021
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
9256587
9256660
+
Gln
TTG
-
¡û
>C191010074
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
12549255
12549328
+
Gln
TTG
-
¡û
>C151092024
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
349884
349811
-
Gln
TTG
-
¡û
>C131010758
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
12770659
12770732
+
Gln
TTG
[Ensembl]
¡û
>W1610520379
JELX01001572
Myxococcota
Sorangium cellulosum [JELX]
17
90
+
Gln
TTG
[ENA]
¡û
>W1610520462
JELZ01000090
Myxococcota
Sorangium cellulosum [JELZ]
191
264
+
Gln
TTG
[ENA]
¡û
>W1610520551
JEMA01001113
Myxococcota
Sorangium cellulosum [JEMA]
242
315
+
Gln
TTG
[ENA]
¡û
>W1610520559
JEMB01000474
Myxococcota
Sorangium cellulosum [JEMB]
1128
1055
-
Gln
TTG
[ENA]
¡û
>W1610520617
JEMC01001156
Myxococcota
Sorangium cellulosum [JEMC]
210
283
+
Gln
TTG
[ENA]
¡û
>W1610520662
JEMD01000358
Myxococcota
Sorangium cellulosum [JEMD]
468
395
-
Gln
TTG
[ENA]
¡û
>W1610520715
JEME01000641
Myxococcota
Sorangium cellulosum [JEME]
240
313
+
Gln
TTG
[ENA]
¡û
>W1710615857
JELX01001572
Myxococcota
Sorangium cellulosum [JELX]
17
90
+
Gln
TTG
[ENA]
¡û
>W1710615940
JELZ01000090
Myxococcota
Sorangium cellulosum [JELZ]
191
264
+
Gln
TTG
[ENA]
¡û
>W1710616029
JEMA01001113
Myxococcota
Sorangium cellulosum [JEMA]
242
315
+
Gln
TTG
[ENA]
¡û
>W1710616037
JEMB01000474
Myxococcota
Sorangium cellulosum [JEMB]
1128
1055
-
Gln
TTG
[ENA]
¡û
>W1710616095
JEMC01001156
Myxococcota
Sorangium cellulosum [JEMC]
210
283
+
Gln
TTG
[ENA]
¡û
>W1710616140
JEMD01000358
Myxococcota
Sorangium cellulosum [JEMD]
468
395
-
Gln
TTG
[ENA]
¡û
>W1710616193
JEME01000641
Myxococcota
Sorangium cellulosum [JEME]
240
313
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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