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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779543 (39 seq.)
>W1711095177
LTGO01000064
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
63105
63178
+
Gly
CCC
[ENA]
¡û
>W1711096609
LTHX01000050
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
16979
16906
-
Gly
CCC
[ENA]
¡û
>W1711103647
LTOW01000074
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
1245
1172
-
Gly
CCC
[ENA]
¡û
>W1711105929
LTRH01000040
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
51893
51966
+
Gly
CCC
[ENA]
¡û
>W1711106532
LTRY01000006
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
13819
13892
+
Gly
CCC
[ENA]
¡û
>W1711106687
LTSB01000118
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
93611
93538
-
Gly
CCC
[ENA]
¡û
>W1711114770
LTZO01000099
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
722
795
+
Gly
CCC
[ENA]
¡û
>W1711185948
LWNU01000051
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
55540
55613
+
Gly
CCC
[ENA]
¡û
>W1711186795
LWOM01000082
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
15647
15720
+
Gly
CCC
[ENA]
¡û
>W131215957
ATVK01000057
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [ATVK]
2679
2606
-
Gly
CCC
[ENA]
¡û
>W131229904
AUHE01000001
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
492745
492818
+
Gly
CCC
[ENA]
¡û
>W131239551
BANT01000036
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [BANT]
2679
2606
-
Gly
CCC
[ENA]
¡û
>W1711510268
MLAL01000027
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
1018
1091
+
Gly
CCC
[ENA]
¡û
>W1711511666
MLCQ01000001
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
202
129
-
Gly
CCC
[ENA]
¡û
>W1711511739
MLCR01000010
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
83824
83751
-
Gly
CCC
[ENA]
¡û
>C171002097
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
2473013
2473086
+
Gly
CCC
-
¡û
>C171064757
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
271174
271101
-
Gly
CCC
-
¡û
>WENV182629643
OJKT01009986
[OJKT] metagenome; surface
336
409
+
Gly
CCC
[ENA]
¢þ
>WENV182636023
OJKZ01000116
[OJKZ] metagenome; surface
15651
15578
-
Gly
CCC
[ENA]
¢þ
>WENV182641816
OJLK01001667
[OJLK] metagenome; surface
576
649
+
Gly
CCC
[ENA]
¢þ
>WENV182643303
OJLU01000411
[OJLU] metagenome; surface
207
280
+
Gly
CCC
[ENA]
¢þ
>WENV182643682
OJLW01000477
[OJLW] metagenome; surface
3893
3966
+
Gly
CCC
[ENA]
¢þ
>WENV182644925
OJLY01000838
[OJLY] metagenome; surface
37
110
+
Gly
CCC
[ENA]
¢þ
>WENV182645950
OJLZ01013168
[OJLZ] metagenome; surface
1379
1306
-
Gly
CCC
[ENA]
¢þ
>WENV182671839
OJNM01004445
[OJNM] metagenome; surface
1530
1603
+
Gly
CCC
[ENA]
¢þ
>WENV170717275
LSQX01029919
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4000
3929
-
Gly
CCC
[ENA]
¢þ
>C181211239
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
144015
144086
+
Gly
CCC
-
¡û
>C181226227
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
2989421
2989348
-
Gly
CCC
-
¡û
>C191163647
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
2291130
2291203
+
Gly
CCC
-
¡û
>W1910225848
FMSX01000017
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
234981
235054
+
Gly
CCC
[ENA]
¡û
>W1810187361
PKHN01000006
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
115355
115282
-
Gly
CCC
[ENA]
¡û
>W1810187455
PKHP01000004
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
212782
212855
+
Gly
CCC
[ENA]
¡û
>C151084498
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
2155497
2155568
+
Gly
CCC
[Ensembl]
¡û
>C161041049
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
2312302
2312229
-
Gly
CCC
[Ensembl]
¡û
>W1610074565
BCWU01000002
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
269132
269059
-
Gly
CCC
[ENA]
¡û
>W1710071683
BCWU01000002
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
269132
269059
-
Gly
CCC
[ENA]
¡û
>W1710534317
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
806093
806166
+
Gly
CCC
[ENA]
¡û
>W1710552144
FOGQ01000005
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
61070
61143
+
Gly
CCC
[ENA]
¡û
>W1710608165
FXAR01000003
Actinomycetota
Corynebacterium pollutisoli [FXAR]
94593
94522
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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