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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779546 (43 seq.)
>W131063393
ANKQ01000003
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
272205
272135
-
Cys
GCA
[ENA]
¡û
>W131087192
AOCI01000220
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
16052
15982
-
Cys
GCA
[ENA]
¡û
>W131203752
ASZQ01000005
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
6277
6347
+
Cys
GCA
[ENA]
¡û
>W131203754
ASZQ01000106
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
3892
3822
-
Cys
GCA
[ENA]
¡û
>W1711377908
MDZH01000204
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
19001
18931
-
Cys
GCA
[ENA]
¡û
>W1711603033
MOLN01000084
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
18118
18048
-
Cys
GCA
[ENA]
¡û
>W1711772042
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1070426
1070496
+
Cys
GCA
[ENA]
¡û
>C171016660
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
754498
754428
-
Cys
GCA
-
¡û
>C171112070
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
5032366
5032436
+
Cys
GCA
-
¡û
>W141065571
AQPY01000703
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
532
602
+
Cys
GCA
[ENA]
¡û
>W141242384
CAIH01000309
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
776
846
+
Cys
GCA
[ENA]
¡û
>W141242408
CAII01000316
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
9464
9534
+
Cys
GCA
[ENA]
¡û
>W141242459
CAIJ01000439
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
9188
9118
-
Cys
GCA
[ENA]
¡û
>W141242496
CAIK01000266
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
1389
1459
+
Cys
GCA
[ENA]
¡û
>W141242537
CAIL01000251
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
46504
46574
+
Cys
GCA
[ENA]
¡û
>W141242566
CAIM01000372
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
111
41
-
Cys
GCA
[ENA]
¡û
>W141242588
CAIN01000001
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
1612
1682
+
Cys
GCA
[ENA]
¡û
>W141242643
CAIO01000268
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
8938
9008
+
Cys
GCA
[ENA]
¡û
>W141242681
CAIP01000168
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
6506
6436
-
Cys
GCA
[ENA]
¡û
>W141242734
CAIQ01000373
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
562
632
+
Cys
GCA
[ENA]
¡û
>C08006367
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4435921
4435851
-
Cys
GCA
[Ensembl]
¡û
>WENV182865720
OKRQ01000652
[OKRQ] freshwater metagenome; freshwater
2599
2529
-
Cys
GCA
[ENA]
¢þ
>WENV170680847
LFEF01027753
[LFEF] freshwater metagenome; waterbloom
24857
24927
+
Cys
GCA
[ENA]
¢þ
>C181046187
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1364295
1364225
-
Cys
GCA
-
¡û
>C191007279
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2311030
2310960
-
Cys
GCA
-
¡û
>W1910020367
BDSG01000115
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
2476
2546
+
Cys
GCA
[ENA]
¡û
>W1910020400
BDSM01000026
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
54649
54719
+
Cys
GCA
[ENA]
¡û
>W1910038641
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
98707
98777
+
Cys
GCA
[ENA]
¡û
>W1910038715
BEIV01000105
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
3594
3664
+
Cys
GCA
[ENA]
¡û
>W1910067372
BEYQ01000014
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
24911
24841
-
Cys
GCA
[ENA]
¡û
>W1910067385
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
253025
252955
-
Cys
GCA
[ENA]
¡û
>W1910142320
BIFY01000013
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
68017
68087
+
Cys
GCA
[ENA]
¡û
>W1910665583
MCIH01000197
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
4862
4932
+
Cys
GCA
[ENA]
¡û
>W1910768669
MOLZ01000025
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
12890
12960
+
Cys
GCA
[ENA]
¡û
>C151079391
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
759219
759149
-
Cys
GCA
[Ensembl]
¡û
>C151080716
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2976009
2975939
-
Cys
GCA
-
¡û
>W1510013638
BBPA01000066
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
134807
134877
+
Cys
GCA
[ENA]
¡û
>W1610550808
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1386206
1386136
-
Cys
GCA
[ENA]
¡û
>W1710004745
AJHB01001460
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
812
742
-
Cys
GCA
[ENA]
¡û
>W1710005095
AJUS01001545
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
813
743
-
Cys
GCA
[ENA]
¡û
>W1710005132
AJUT01001441
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
114
44
-
Cys
GCA
[ENA]
¡û
>W1710005168
AJUU01001426
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
112
42
-
Cys
GCA
[ENA]
¡û
>W1710660685
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1386206
1386136
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK