This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779616 (111 seq.)
>W131094409
AONY01000014
Gammaproteobacteria
Dickeya oryzae CSL RW192 [AONY]
27518
27591
+
Cys
GCA
[ENA]
¡û
>W131094529
AOOA01000037
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 402 [AOOA]
72358
72285
-
Cys
GCA
[ENA]
¡û
>W131094639
AOOC01000008
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 516 [AOOC]
522814
522887
+
Cys
GCA
[ENA]
¡û
>W131094723
AOOD01000041
Gammaproteobacteria
Dickeya poaceiphila NCPPB 569 [AOOD]
9810
9737
-
Cys
GCA
[ENA]
¡û
>W131094787
AOOE01000027
Gammaproteobacteria
Dickeya dadantii NCPPB 898 [AOOE]
363059
362986
-
Cys
GCA
[ENA]
¡û
>W131094860
AOOF01000021
Gammaproteobacteria
Dickeya zeae NCPPB 2538 [AOOF]
71330
71257
-
Cys
GCA
[ENA]
¡û
>W131094918
AOOG01000051
Gammaproteobacteria
Dickeya dadantii subsp. dadantii NCPPB 2976 [AOOG]
89908
89835
-
Cys
GCA
[ENA]
¡û
>W131094982
AOOH01000032
Gammaproteobacteria
Dickeya sp. NCPPB 3274 [AOOH]
22603
22530
-
Cys
GCA
[ENA]
¡û
>W131095058
AOOI01000016
Gammaproteobacteria
Dickeya zeae NCPPB 3531 [AOOI]
80212
80139
-
Cys
GCA
[ENA]
¡û
>W131095103
AOOJ01000022
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 3533 [AOOJ]
16918
16991
+
Cys
GCA
[ENA]
¡û
>W131095254
AOOL01000021
Gammaproteobacteria
Dickeya dadantii NCPPB 3537 [AOOL]
456966
456893
-
Cys
GCA
[ENA]
¡û
>W131095424
AOOO01000030
Gammaproteobacteria
Dickeya sp. MK7 [AOOO]
358988
358915
-
Cys
GCA
[ENA]
¡û
>W131095607
AOOR01000005
Gammaproteobacteria
Dickeya zeae MK19 [AOOR]
18165
18238
+
Cys
GCA
[ENA]
¡û
>W131111971
APMV01000014
Gammaproteobacteria
Dickeya zeae DZ2Q [APMV]
75953
75880
-
Cys
GCA
[ENA]
¡û
>W131125906
APWM01000003
Gammaproteobacteria
Dickeya zeae MS1 [APWM]
85337
85264
-
Cys
GCA
[ENA]
¡û
>W131238024
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
938892
938819
-
Cys
GCA
[ENA]
¡û
>W1711513224
MLFO01000032
Gammaproteobacteria
Mixta calida [MLFO]
3821
3748
-
Cys
GCA
[ENA]
¡û
>W1711517180
MLJI01000001
Gammaproteobacteria
Pantoea cypripedii [MLJI]
1547518
1547591
+
Cys
GCA
[ENA]
¡û
>W1711517277
MLJJ01000041
Gammaproteobacteria
Pantoea septica [MLJJ]
3429
3502
+
Cys
GCA
[ENA]
¡û
>W1711572490
MNBX01000088
Gammaproteobacteria
Sodalis sp. TME1 [MNBX]
6779
6852
+
Cys
GCA
[ENA]
¡û
>W1711621713
MPDL01000091
Gammaproteobacteria
Dickeya dadantii [MPDL]
158
85
-
Cys
GCA
[ENA]
¡û
>W1711666358
MRBS01000002
Gammaproteobacteria
Pantoea sp. 1.19 [MRBS]
5851
5778
-
Cys
GCA
[ENA]
¡û
>W1711678720
MRUL01000003
Gammaproteobacteria
Izhakiella australiensis D4N98 [MRUL]
173041
172968
-
Cys
GCA
[ENA]
¡û
>W1711797967
MWUE01000004
Gammaproteobacteria
Pantoea latae AS1 [MWUE]
54378
54305
-
Cys
GCA
[ENA]
¡û
>W1712096120
NHZE01000013
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
524066
524139
+
Cys
GCA
[ENA]
¡û
>C171098582
CP019706
Gammaproteobacteria
Pantoea alhagi LTYR-11Z [CP019706]
4195090
4195017
-
Cys
GCA
-
¡û
>W141055456
AONV01000017
Gammaproteobacteria
Musicola paradisiaca NCPPB 2511 [AONV]
438916
438989
+
Cys
GCA
[ENA]
¡û
>W141055545
AONW01000011
Gammaproteobacteria
Dickeya zeae NCPPB 3532 [AONW]
292968
292895
-
Cys
GCA
[ENA]
¡û
>W141074749
ASZC01000002
Gammaproteobacteria
Pantoea sp. AS-PWVM4 [ASZC]
472815
472888
+
Cys
GCA
[ENA]
¡û
>W141111685
AVSS01000023
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
18893
18820
-
Cys
GCA
[ENA]
¡û
>W141230066
BASS01000261
Gammaproteobacteria
Sodalis-like symbiont of Philaenus spumarius [BASS]
214
287
+
Cys
GCA
[ENA]
¡û
>W141261076
CCAQ010000005
Gammaproteobacteria
Pantoea septica FF5 [CCAQ]
184479
184552
+
Cys
GCA
[ENA]
¡û
>WENV182807818
OJWA01000001
[OJWA] human gut metagenome; human gut
240830
240903
+
Cys
GCA
[ENA]
¢þ
>WENV182836963
OKGA01001315
[OKGA] human gut metagenome; human gut
2167
2094
-
Cys
GCA
[ENA]
¢þ
>WENV182845537
OKJE01000036
[OKJE] human gut metagenome; human gut
62860
62933
+
Cys
GCA
[ENA]
¢þ
>WENV182846373
OKJL01001286
[OKJL] human gut metagenome; human gut
1737
1810
+
Cys
GCA
[ENA]
¢þ
>WENV182855877
OKNF01000132
[OKNF] human gut metagenome; human gut
15162
15235
+
Cys
GCA
[ENA]
¢þ
>WENV182864358
OKQC01000610
[OKQC] human gut metagenome; human gut
504
577
+
Cys
GCA
[ENA]
¢þ
>WENV170001982
AGFT01058818
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
429
356
-
Cys
GCA
[ENA]
¢þ
>C181081957
CP023467
Gammaproteobacteria
Dickeya dadantii DSM 18020 [CP023467]
3198924
3198851
-
Cys
GCA
-
¡û
>C181082474
CP023484
Gammaproteobacteria
Dickeya sp. Secpp 1600 [CP023484]
3298364
3298291
-
Cys
GCA
-
¡û
>C181110424
CP025003
Gammaproteobacteria
Dickeya fangzhongdai DSM 101947 [CP025003]
3244677
3244604
-
Cys
GCA
-
¡û
>C181123192
CP025799
Gammaproteobacteria
Dickeya zeae MS2 [CP025799]
3009008
3008935
-
Cys
GCA
-
¡û
>C181132911
CP026378
Gammaproteobacteria
Mixta calida DSM 22759 [CP026378]
1704547
1704620
+
Cys
GCA
-
¡û
>C181215538
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1592335
1592408
+
Cys
GCA
-
¡û
>C191018180
CP020872
Gammaproteobacteria
Dickeya fangzhongdai PA1 [CP020872]
3234923
3234850
-
Cys
GCA
-
¡û
>W141710664
JMPN01000011
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
27314
27387
+
Cys
GCA
[ENA]
¡û
>W141808424
JPQA01000005
Gammaproteobacteria
Pantoea sp. NGS-ED-1003 [JPQA]
99350
99277
-
Cys
GCA
[ENA]
¡û
>C09103771
CP001654
Gammaproteobacteria
Musicola paradisiaca Ech703 [CP001654]
1782656
1782729
+
Cys
GCA
[Ensembl]
¡û
>C09104459
CP001655
Gammaproteobacteria
Dickeya chrysanthemi Ech1591 [CP001655]
1740083
1740156
+
Cys
GCA
[Ensembl]
¡û
>W1910918892
NIBT01000022
Gammaproteobacteria
Xenorhabdus ehlersii DSM 16337 [NIBT]
21449
21376
-
Cys
GCA
[ENA]
¡û
>W1910941443
NJCX01000035
Gammaproteobacteria
Xenorhabdus kozodoii DSM 17907 [NJCX]
4711
4638
-
Cys
GCA
[ENA]
¡û
>W1910942261
NJGH01000073
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
12122
12195
+
Cys
GCA
[ENA]
¡û
>W1911397711
NWFM02000004
Gammaproteobacteria
Pantoea sp. FDAARGOS_194 [NWFM]
2038876
2038949
+
Cys
GCA
[ENA]
¡û
>W1911411348
NWUO01000001
Gammaproteobacteria
Mixta theicola QC88-366 [NWUO]
202545
202472
-
Cys
GCA
[ENA]
¡û
>W1911701663
QNUT01000020
Gammaproteobacteria
Dickeya lacustris S29 [QNUT]
302823
302896
+
Cys
GCA
[ENA]
¡û
>W1810226468
POWM01000001
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
629314
629387
+
Cys
GCA
[ENA]
¡û
>W1810226548
POWN01000001
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
604268
604195
-
Cys
GCA
[ENA]
¡û
>W1810257587
PQJV01000005
Gammaproteobacteria
Pantoea alvi PSNIH6 [PQJV]
184769
184842
+
Cys
GCA
[ENA]
¡û
>W1810257626
PQJW01000002
Gammaproteobacteria
Pantoea sp. PSNIH3 [PQJW]
222130
222203
+
Cys
GCA
[ENA]
¡û
>W1810257702
PQJX01000002
Gammaproteobacteria
Pantoea sp. PSNIH5 [PQJX]
107954
107881
-
Cys
GCA
[ENA]
¡û
>W1810257859
PQJZ01000004
Gammaproteobacteria
Pantoea sp. PSNIH4 [PQJZ]
31471
31398
-
Cys
GCA
[ENA]
¡û
>W1810658403
QJJH01000003
Gammaproteobacteria
Erwinia sp. AG740 [QJJH]
347299
347372
+
Cys
GCA
[ENA]
¡û
>W1810861734
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
3746674
3746747
+
Cys
GCA
[ENA]
¡û
>C151001000
AP012551
Gammaproteobacteria
Plautia stali symbiont [AP012551]
2992917
2992844
-
Cys
GCA
[Ensembl]
¡û
>C151009217
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
1902749
1902676
-
Cys
GCA
[Ensembl]
¡û
>C151009295
CP006569
Gammaproteobacteria
Sodalis praecaptivus HS1 [CP006569]
2952969
2952896
-
Cys
GCA
[Ensembl]
¡û
>C151014851
CP006929
Gammaproteobacteria
Dickeya zeae EC1 [CP006929]
2819280
2819207
-
Cys
GCA
[Ensembl]
¡û
>C151051887
CP009460
Gammaproteobacteria
Dickeya fangzhongdai ND14b [CP009460]
4567674
4567747
+
Cys
GCA
[Ensembl]
¡û
>C151060916
CP009866
Gammaproteobacteria
Pantoea sp. PSNIH2 [CP009866]
2279316
2279243
-
Cys
GCA
[Ensembl]
¡û
>W10106258
ACYJ01000031
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
15900
15973
+
Cys
GCA
[ENA]
¡û
>W10106337
ACYK01000017
Gammaproteobacteria
Dickeya parazeae Ech586 [ACYK]
40417
40344
-
Cys
GCA
[ENA]
¡û
>C10105058
CP002038
Gammaproteobacteria
Dickeya dadantii 3937 [CP002038]
3104207
3104134
-
Cys
GCA
[Ensembl]
¡û
>C10105095
CP001836
Gammaproteobacteria
Dickeya parazeae Ech586 [CP001836]
1683863
1683936
+
Cys
GCA
[Ensembl]
¡û
>WENV11102054
AGFT01058818
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
429
356
-
Cys
GCA
[ENA]
¡û
>W11108581
ACYJ01000031
Gammaproteobacteria
Pantoea sp. At-9b [ACYJ]
15900
15973
+
Cys
GCA
[ENA]
¡û
>W11108660
ACYK01000017
Gammaproteobacteria
Dickeya parazeae Ech586 [ACYK]
40417
40344
-
Cys
GCA
[ENA]
¡û
>C11116700
CP002433
Gammaproteobacteria
Pantoea sp. At-9b [CP002433]
1578044
1578117
+
Cys
GCA
[Ensembl]
¡û
>W1511358323
JRWY01000046
Gammaproteobacteria
Dickeya fangzhongdai M074 [JRWY]
4851
4778
-
Cys
GCA
[ENA]
¡û
>W1511389879
JSXD01000011
Gammaproteobacteria
Dickeya fangzhongdai M005 [JSXD]
41102
41029
-
Cys
GCA
[ENA]
¡û
>W1511390614
JSYG01000004
Gammaproteobacteria
Dickeya undicola 2B12 [JSYG]
209010
208937
-
Cys
GCA
[ENA]
¡û
>W1511390691
JSYH01000022
Gammaproteobacteria
Dickeya chrysanthemi L11 [JSYH]
164230
164157
-
Cys
GCA
[ENA]
¡û
>W1511441543
JUQR01000347
Gammaproteobacteria
Pantoea vagans 848_PVAG [JUQR]
42733
42660
-
Cys
GCA
[ENA]
¡û
>W1511501030
JXBN01000005
Gammaproteobacteria
Dickeya fangzhongdai B16 [JXBN]
203974
204047
+
Cys
GCA
[ENA]
¡û
>W1511501135
JXBO01000050
Gammaproteobacteria
Dickeya fangzhongdai S1 [JXBO]
15220
15293
+
Cys
GCA
[ENA]
¡û
>W1511657015
LEKX01007966
Gammaproteobacteria
Pantoea dispersa SUBG008 [LEKX]
236
163
-
Cys
GCA
[ENA]
¡û
>W11184505
BABY01000058
Gammaproteobacteria
Plautia stali symbiont [BABY]
4229
4156
-
Cys
GCA
[ENA]
¡û
>W121069033
AJVN01000002
Gammaproteobacteria
Dickeya zeae ZJU1202 [AJVN]
227680
227607
-
Cys
GCA
[ENA]
¡û
>W1610053030
BBNZ01000013
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
78730
78657
-
Cys
GCA
[ENA]
¡û
>W1610053107
BBOB01000002
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
17526
17453
-
Cys
GCA
[ENA]
¡û
>W1610591087
LDRY01000008
Gammaproteobacteria
Pantoea dispersa [LDRY]
102492
102419
-
Cys
GCA
[ENA]
¡û
>W1610591179
LDRZ01000023
Gammaproteobacteria
Pantoea dispersa [LDRZ]
36920
36847
-
Cys
GCA
[ENA]
¡û
>W1610591220
LDSA01000012
Gammaproteobacteria
Pantoea dispersa [LDSA]
138960
138887
-
Cys
GCA
[ENA]
¡û
>W1610591299
LDSB01000017
Gammaproteobacteria
Pantoea dispersa [LDSB]
21854
21927
+
Cys
GCA
[ENA]
¡û
>W1610591337
LDSC01000001
Gammaproteobacteria
Pantoea dispersa [LDSC]
629347
629420
+
Cys
GCA
[ENA]
¡û
>W1610591399
LDSD01000003
Gammaproteobacteria
Pantoea dispersa [LDSD]
62987
63060
+
Cys
GCA
[ENA]
¡û
>W1610591516
LDSE01000050
Gammaproteobacteria
Pantoea dispersa [LDSE]
3809
3736
-
Cys
GCA
[ENA]
¡û
>W1610591581
LDSF01000040
Gammaproteobacteria
Pantoea dispersa [LDSF]
93468
93541
+
Cys
GCA
[ENA]
¡û
>W1610591608
LDSG01000007
Gammaproteobacteria
Pantoea dispersa [LDSG]
577601
577674
+
Cys
GCA
[ENA]
¡û
>W1710049408
BBNZ01000013
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
78730
78657
-
Cys
GCA
[ENA]
¡û
>W1710049485
BBOB01000002
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
17526
17453
-
Cys
GCA
[ENA]
¡û
>W1710570347
FOVC01000001
Gammaproteobacteria
Izhakiella capsodis [FOVC]
297728
297801
+
Cys
GCA
[ENA]
¡û
>W1710710367
LDRY01000008
Gammaproteobacteria
Pantoea dispersa [LDRY]
102492
102419
-
Cys
GCA
[ENA]
¡û
>W1710710459
LDRZ01000023
Gammaproteobacteria
Pantoea dispersa [LDRZ]
36920
36847
-
Cys
GCA
[ENA]
¡û
>W1710710500
LDSA01000012
Gammaproteobacteria
Pantoea dispersa [LDSA]
138960
138887
-
Cys
GCA
[ENA]
¡û
>W1710710579
LDSB01000017
Gammaproteobacteria
Pantoea dispersa [LDSB]
21854
21927
+
Cys
GCA
[ENA]
¡û
>W1710710617
LDSC01000001
Gammaproteobacteria
Pantoea dispersa [LDSC]
629347
629420
+
Cys
GCA
[ENA]
¡û
>W1710710679
LDSD01000003
Gammaproteobacteria
Pantoea dispersa [LDSD]
62987
63060
+
Cys
GCA
[ENA]
¡û
>W1710710796
LDSE01000050
Gammaproteobacteria
Pantoea dispersa [LDSE]
3809
3736
-
Cys
GCA
[ENA]
¡û
>W1710710861
LDSF01000040
Gammaproteobacteria
Pantoea dispersa [LDSF]
93468
93541
+
Cys
GCA
[ENA]
¡û
>W1710710888
LDSG01000007
Gammaproteobacteria
Pantoea dispersa [LDSG]
577601
577674
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK