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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779697 (90 seq.)
>W1710856310
LLZH01000306
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
57977
58050
+
Gly
CCC
[ENA]
¡û
>W131165779
ARBV01000040
Actinomycetota
Nonomuraea coxensis DSM 45129 [ARBV]
75797
75870
+
Gly
CCC
[ENA]
¡û
>W1711710932
MSZZ01000052
Actinomycetota
Thermoactinospora rubra [MSZZ]
23280
23209
-
Gly
CCC
[ENA]
¡û
>W1711792274
MWJN01000028
Actinomycetota
Microbispora sp. GKU 823 [MWJN]
64771
64698
-
Gly
CCC
[ENA]
¡û
>WENV011113
AACY020302718
Marine microbial communities from Global Ocean Sampling (GOS)
2411
2486
+
Gly
CCC
[ENA]
>W1712061781
NGFP01000334
Actinomycetota
Streptosporangium minutum M26 [NGFP]
7874
7801
-
Gly
CCC
[ENA]
¡û
>C171066461
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
9335157
9335084
-
Gly
CCC
-
¡û
>C171131351
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
66785
66712
-
Gly
CCC
-
¡û
>WENV180360779
OBNU01024118
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
450
377
-
Gly
CCC
[ENA]
¢þ
>WENV180384139
OBOW01017605
[OBOW] marine metagenome; seawater
196
125
-
Gly
CCC
[ENA]
¢þ
>WENV181126418
OEFV01077558
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
91
164
+
Gly
CCC
[ENA]
¢þ
>W141135795
AWEV01000206
Actinomycetota
Microbispora sp. ATCC PTA-5024 [AWEV]
13480
13553
+
Gly
CCC
[ENA]
¡û
>WENV019306
AACY020529842
Marine microbial communities from Global Ocean Sampling (GOS)
681
608
-
Gly
CCC
[ENA]
>WENV019751
AACY020538315
Marine microbial communities from Global Ocean Sampling (GOS)
140
67
-
Gly
CCC
[ENA]
>ENV08000748
ABMI01051628
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
7
80
+
Gly
CCC
[ENA]
¡û
>WENV020650
AACY020556913
Marine microbial communities from Global Ocean Sampling (GOS)
11433
11360
-
Gly
CCC
[ENA]
>WENV170572831
FLOH01001362
[FLOH] marine metagenome; water
22793
22864
+
Gly
CCC
[ENA]
¢þ
>WENV170613003
FUWD012771401
[FUWD] metagenome; unknown
164
235
+
Gly
CCC
[ENA]
¢þ
>C181078636
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
66785
66712
-
Gly
CCC
-
¡û
>W09110064
ABUU01000176
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
3596
3523
-
Gly
CCC
[ENA]
¡û
>W141758303
JNYN01000613
Actinomycetota
Actinoplanes liguriensis [JNYN]
4763
4690
-
Gly
CCC
[ENA]
¡û
>W141758648
JNYT01000423
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
559
488
-
Gly
CCC
[ENA]
¡û
>W141759611
JNZL01001632
Actinomycetota
Sphaerisporangium viridialbum [JNZL]
1065
992
-
Gly
CCC
[ENA]
¡û
>W141759632
JNZM01000010
Actinomycetota
Microbispora rosea subsp. rosea [JNZM]
2885
2958
+
Gly
CCC
[ENA]
¡û
>W141759869
JNZQ01000026
Actinomycetota
Microbispora rosea subsp. nonnitritogenes [JNZQ]
143742
143815
+
Gly
CCC
[ENA]
¡û
>W141760757
JOAG01000019
Actinomycetota
Nonomuraea candida [JOAG]
172789
172718
-
Gly
CCC
[ENA]
¡û
>W141765880
JODQ01000002
Actinomycetota
Herbidospora cretacea [JODQ]
711486
711557
+
Gly
CCC
[ENA]
¡û
>W141767419
JOEP01000028
Actinomycetota
Streptosporangium roseum [JOEP]
88076
88149
+
Gly
CCC
[ENA]
¡û
>W141767487
JOEQ01000045
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
80196
80269
+
Gly
CCC
[ENA]
¡û
>W1910547351
FZNR01000023
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
35685
35612
-
Gly
CCC
[ENA]
¡û
>W1910547902
FZOD01000071
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
12154
12081
-
Gly
CCC
[ENA]
¡û
>W1911541329
OOHJ01000018
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
3417712
3417785
+
Gly
CCC
[ENA]
¡û
>W1911676956
QHHZ01000016
Actinomycetota
Nonomuraea sp. WAC 01424 [QHHZ]
155754
155827
+
Gly
CCC
[ENA]
¡û
>SRA1000730
SRR001046.217913
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
7
80
+
Gly
CCC
[SRA]
>W1810089838
PGEZ01000001
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
2273160
2273233
+
Gly
CCC
[ENA]
¡û
>W1810173914
PJOK01000025
Actinomycetota
Nonomuraea indica DRQ-2 [PJOK]
22411
22482
+
Gly
CCC
[ENA]
¡û
>W1810224220
POUD01000018
Actinomycetota
Nonomuraea aridisoli KC333 [POUD]
34762
34691
-
Gly
CCC
[ENA]
¡û
>W1810356541
PVMZ01000021
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
135589
135660
+
Gly
CCC
[ENA]
¡û
>SRA1005243
SRR006907.130249
metagenomic water samples (SRP000427)
126
53
-
Gly
CCC
[SRA]
>W1810594498
QFZU02000014
Actinomycetota
Microbispora triticiradicis NEAU-HRDPA2-9 [QFZU]
51817
51890
+
Gly
CCC
[ENA]
¡û
>W1810596659
QGGR01000023
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
45296
45223
-
Gly
CCC
[ENA]
¡û
>W1810707256
QNFZ01000051
Actinomycetota
Nonomuraea lactucae NEAU-YG30 [QNFZ]
13381
13454
+
Gly
CCC
[ENA]
¡û
>W1810735316
QOIL01000004
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
358389
358318
-
Gly
CCC
[ENA]
¡û
>C10112451
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
907338
907265
-
Gly
CCC
[Ensembl]
¡û
>W1511355825
JRTT01000019
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
90373
90446
+
Gly
CCC
[ENA]
¡û
>W1511398083
JTDJ01000061
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
19327
19254
-
Gly
CCC
[ENA]
¡û
>W1511545105
JZKF01000017
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
49053
49126
+
Gly
CCC
[ENA]
¡û
>W1511584508
LAVL01000072
Actinomycetota
Nonomuraea sp. SBT364 [LAVL]
26122
26051
-
Gly
CCC
[ENA]
¡û
>C121007301
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
66784
66711
-
Gly
CCC
[Ensembl]
¡û
>WENV050948
AACY022917582
Marine microbial communities from Global Ocean Sampling (GOS)
644
717
+
Gly
CCC
[ENA]
>W1610057150
BBXC01000011
Actinomycetota
Herbidospora sakaeratensis [BBXC]
297847
297918
+
Gly
CCC
[ENA]
¡û
>W1610057216
BBXD01000016
Actinomycetota
Herbidospora mongoliensis [BBXD]
2948
2875
-
Gly
CCC
[ENA]
¡û
>W1610057249
BBXE01000013
Actinomycetota
Herbidospora yilanensis [BBXE]
895220
895291
+
Gly
CCC
[ENA]
¡û
>W1610057325
BBXF01000002
Actinomycetota
Herbidospora daliensis [BBXF]
1500405
1500334
-
Gly
CCC
[ENA]
¡û
>W1610057376
BBXG01000007
Actinomycetota
Herbidospora cretacea [BBXG]
314607
314536
-
Gly
CCC
[ENA]
¡û
>W1610057582
BBYJ01000039
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
10488
10415
-
Gly
CCC
[ENA]
¡û
>W1610057584
BBYK01000038
Actinomycetota
Microtetraspora fusca [BBYK]
605224
605297
+
Gly
CCC
[ENA]
¡û
>W1610057650
BBYL01000007
Actinomycetota
Microtetraspora glauca [BBYL]
287591
287518
-
Gly
CCC
[ENA]
¡û
>W1610057744
BBYM01000030
Actinomycetota
Microtetraspora niveoalba [BBYM]
14172
14245
+
Gly
CCC
[ENA]
¡û
>W1610057825
BBZG01000002
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
935043
935114
+
Gly
CCC
[ENA]
¡û
>W1610080990
BDCX01000004
Actinomycetota
Planomonospora sphaerica [BDCX]
88901
88828
-
Gly
CCC
[ENA]
¡û
>WENV070049
AACY023794605
Marine microbial communities from Global Ocean Sampling (GOS)
359
286
-
Gly
CCC
[ENA]
>WENV070396
AACY023807716
Marine microbial communities from Global Ocean Sampling (GOS)
608
683
+
Gly
CCC
[ENA]
>WENV070420
AACY023808409
Marine microbial communities from Global Ocean Sampling (GOS)
1001
926
-
Gly
CCC
[ENA]
>WENV070556
AACY023813417
Marine microbial communities from Global Ocean Sampling (GOS)
383
458
+
Gly
CCC
[ENA]
>WENV070653
AACY023817412
Marine microbial communities from Global Ocean Sampling (GOS)
790
863
+
Gly
CCC
[ENA]
>WENV070670
AACY023818111
Marine microbial communities from Global Ocean Sampling (GOS)
1077
1152
+
Gly
CCC
[ENA]
>W1610526158
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
653585
653512
-
Gly
CCC
[ENA]
¡û
>W1610718691
LLZH01000306
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
57977
58050
+
Gly
CCC
[ENA]
¡û
>WENV076816
AACY024110639
Marine microbial communities from Global Ocean Sampling (GOS)
609
536
-
Gly
CCC
[ENA]
>W1710053849
BBXC01000011
Actinomycetota
Herbidospora sakaeratensis [BBXC]
297847
297918
+
Gly
CCC
[ENA]
¡û
>W1710053915
BBXD01000016
Actinomycetota
Herbidospora mongoliensis [BBXD]
2948
2875
-
Gly
CCC
[ENA]
¡û
>W1710053948
BBXE01000013
Actinomycetota
Herbidospora yilanensis [BBXE]
895220
895291
+
Gly
CCC
[ENA]
¡û
>W1710054024
BBXF01000002
Actinomycetota
Herbidospora daliensis [BBXF]
1500405
1500334
-
Gly
CCC
[ENA]
¡û
>W1710054075
BBXG01000007
Actinomycetota
Herbidospora cretacea [BBXG]
314607
314536
-
Gly
CCC
[ENA]
¡û
>W1710054281
BBYJ01000039
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
10488
10415
-
Gly
CCC
[ENA]
¡û
>W1710054283
BBYK01000038
Actinomycetota
Microtetraspora fusca [BBYK]
605224
605297
+
Gly
CCC
[ENA]
¡û
>W1710054349
BBYL01000007
Actinomycetota
Microtetraspora glauca [BBYL]
287591
287518
-
Gly
CCC
[ENA]
¡û
>W1710054443
BBYM01000030
Actinomycetota
Microtetraspora niveoalba [BBYM]
14172
14245
+
Gly
CCC
[ENA]
¡û
>W1710054524
BBZG01000002
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
935043
935114
+
Gly
CCC
[ENA]
¡û
>W1710079641
BDCX01000004
Actinomycetota
Planomonospora sphaerica [BDCX]
88901
88828
-
Gly
CCC
[ENA]
¡û
>W1710516341
FNCN01000004
Actinomycetota
Sinosporangium album [FNCN]
303158
303085
-
Gly
CCC
[ENA]
¡û
>W1710517487
FNDJ01000006
Actinomycetota
Nonomuraea jiangxiensis [FNDJ]
123431
123358
-
Gly
CCC
[ENA]
¡û
>W1710519869
FNFB01000020
Actinomycetota
Nonomuraea maritima [FNFB]
10091
10018
-
Gly
CCC
[ENA]
¡û
>W1710539898
FNVT01000016
Actinomycetota
Nonomuraea solani [FNVT]
224267
224196
-
Gly
CCC
[ENA]
¡û
>W1710545089
FOBF01000015
Actinomycetota
Nonomuraea pusilla [FOBF]
54354
54283
-
Gly
CCC
[ENA]
¡û
>W1710553784
FOHX01000003
Actinomycetota
Nonomuraea wenchangensis [FOHX]
589808
589737
-
Gly
CCC
[ENA]
¡û
>W1710565065
FOQY01000022
Actinomycetota
Streptosporangium canum [FOQY]
14264
14191
-
Gly
CCC
[ENA]
¡û
>W1710597648
FTNI01000019
Actinomycetota
Microbispora rosea [FTNI]
45995
45922
-
Gly
CCC
[ENA]
¡û
>W1710627396
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
653585
653512
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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