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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780017 (14 seq.)
>W1711666472
MRBY01000037
Cyanobacteriota
[Limnothrix rosea] IAM M-220 IAM M-220 [MRBY]
25634
25564
-
Gly
TCC
[ENA]
¡û
>W141231486
BAUB01000013
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
64429
64499
+
Gly
TCC
[ENA]
¡û
>W141234750
BAWS01000006
Cyanobacteriota
Picosynechococcus sp. NKBG042902 NKBG 042902 [BAWS]
106963
106893
-
Gly
TCC
[ENA]
¡û
>C08010858
CP000951
Cyanobacteriota
Picosynechococcus sp. PCC 7002 PCC 7002; ATCC 27264 [CP000951]
2166449
2166519
+
Gly
TCC
[Ensembl]
¡û
>WENV170640227
JFJP01015027
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2752
2682
-
Gly
TCC
[ENA]
¢þ
>C181003867
AP017959
Cyanobacteriota
[Synechococcus] sp. NIES-970 [AP017959]
2272571
2272641
+
Gly
TCC
-
¡û
>W1810047889
PCGE01000010
Cyanobacteriota
Synechococcus sp. BDU 130192 [PCGE]
57527
57597
+
Gly
TCC
[ENA]
¡û
>C161063990
CP013998
Cyanobacteriota
Picosynechococcus sp. PCC 73109 [CP013998]
2166544
2166614
+
Gly
TCC
-
¡û
>C161097313
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
2219193
2219263
+
Gly
TCC
[Ensembl]
¡û
>C161097355
CP016477
Cyanobacteriota
Picosynechococcus sp. PCC 7117 [CP016477]
2189853
2189923
+
Gly
TCC
[Ensembl]
¡û
>C161097396
CP016483
Cyanobacteriota
Picosynechococcus sp. PCC 8807 [CP016483]
2193541
2193611
+
Gly
TCC
-
¡û
>C131010463
CP003946
Cyanobacteriota
[Leptolyngbya] sp. PCC 7376 [CP003946]
4309461
4309391
-
Gly
TCC
[Ensembl]
¡û
>W1710608987
FXBO01000001
Cyanobacteriota
Picosynechococcus sp. OG1 OG1 [FXBO]
2816011
2815941
-
Gly
TCC
[ENA]
¡û
>W1710609631
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
2069378
2069308
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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