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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780093 (31 seq.)
>W131155777
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
451114
451187
+
Gly
TCC
[ENA]
¡û
>W1711129671
LUUF01000103
Gammaproteobacteria
Methylomonas methanica [LUUF]
229
156
-
Gly
TCC
[ENA]
¡û
>W1711129700
LUUG01000083
Gammaproteobacteria
Methylomonas methanica [LUUG]
9425
9498
+
Gly
TCC
[ENA]
¡û
>W1711129727
LUUH01000038
Gammaproteobacteria
Methylomonas methanica [LUUH]
214954
215027
+
Gly
TCC
[ENA]
¡û
>W1711129806
LUUJ01000007
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
302
229
-
Gly
TCC
[ENA]
¡û
>W1711129862
LUUK01000054
Gammaproteobacteria
Methylomonas koyamae [LUUK]
25087
25160
+
Gly
TCC
[ENA]
¡û
>W1711129897
LUUL01000054
Gammaproteobacteria
Methylomonas koyamae [LUUL]
18382
18455
+
Gly
TCC
[ENA]
¡û
>W1711494844
MKMC01000009
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
114439
114512
+
Gly
TCC
[ENA]
¡û
>W141219940
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1215806
1215733
-
Gly
TCC
[ENA]
¡û
>WENV170557159
CXWL01020351
[CXWL] groundwater metagenome; biofilm material
2943
2870
-
Gly
TCC
[ENA]
¢þ
>WENV170577521
FSSH01000114
[FSSH] freshwater metagenome; drinking water
5013
4940
-
Gly
TCC
[ENA]
¢þ
>WENV170577938
FSSH01003444
[FSSH] freshwater metagenome; drinking water
1348
1421
+
Gly
TCC
[ENA]
¢þ
>WENV170641938
JFJP01038268
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13321
13248
-
Gly
TCC
[ENA]
¢þ
>C181059052
CP022129
Gammaproteobacteria
Methylovulum psychrotolerans HV10_M2 [CP022129]
1183277
1183204
-
Gly
TCC
-
¡û
>C181088677
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4116342
4116269
-
Gly
TCC
-
¡û
>C191105410
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
959684
959757
+
Gly
TCC
-
¡û
>W141733696
JNLB01000002
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
431346
431419
+
Gly
TCC
[ENA]
¡û
>W1810090387
PGFZ01000002
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
422188
422261
+
Gly
TCC
[ENA]
¡û
>W1810154927
PIZT01000007
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
261078
261151
+
Gly
TCC
[ENA]
¡û
>C11114745
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4244959
4244886
-
Gly
TCC
[Ensembl]
¡û
>W1511397888
JTDD01000125
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
41513
41586
+
Gly
TCC
[ENA]
¡û
>C161072127
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
4027695
4027622
-
Gly
TCC
[Ensembl]
¡û
>C161072438
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3175032
3175105
+
Gly
TCC
[Ensembl]
¡û
>W1610046491
BBCK01000084
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
18356
18429
+
Gly
TCC
[ENA]
¡û
>W1610940744
LUUF01000103
Gammaproteobacteria
Methylomonas methanica [LUUF]
229
156
-
Gly
TCC
[ENA]
¡û
>W1610940773
LUUG01000083
Gammaproteobacteria
Methylomonas methanica [LUUG]
9425
9498
+
Gly
TCC
[ENA]
¡û
>W1610940800
LUUH01000038
Gammaproteobacteria
Methylomonas methanica [LUUH]
214954
215027
+
Gly
TCC
[ENA]
¡û
>W1610940879
LUUJ01000007
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
302
229
-
Gly
TCC
[ENA]
¡û
>W1610940935
LUUK01000054
Gammaproteobacteria
Methylomonas koyamae [LUUK]
25087
25160
+
Gly
TCC
[ENA]
¡û
>W1610940970
LUUL01000054
Gammaproteobacteria
Methylomonas koyamae [LUUL]
18382
18455
+
Gly
TCC
[ENA]
¡û
>W1710043287
BBCK01000084
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
18356
18429
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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