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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780165 (6 seq.)
>WENV180067199
MPLY02186097
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
621
549
-
Glu
TTC
[ENA]
¡û
>WENV180087836
MPME02129544
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
1208
1280
+
Glu
TTC
[ENA]
¡û
>WENV170309763
CESL01209501
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
362
-
Glu
TTC
[ENA]
¡û
>WENV170378622
CETV01035034
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
222
296
+
Glu
TTC
[ENA]
¡û
>WENV170602176
FUWD010219881
[FUWD] metagenome; unknown
269
195
-
Glu
TTC
[ENA]
¡û
>WENV170753074
LUMJ01014478
[LUMJ] marine metagenome; Red Sea water column Station 22 - depth 500m
507
581
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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